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[186607_s_at]

Description Y59E9AR.8 /REP_DB=WormBase Gene ID /WP=CE22665 /TR=Q9N2L8 /GB=AAF60825.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 35.1
(-1.4)
A 		61.5
(0.6)
A 		12.6
(-3)
A 		94.5
(3)
A 		82
B 63.8
(3)
A 		38.8
(0)
A 		13
(-3)
A 		61.3
(2.7)
A 		51
C 25.8
(-1.9)
A 		11.8
(-2.8)
A 		7.7
(-3)
A 		109.4
(3)
A 		102
avr 41.6
(-0.6) 		37.4
(-1) 		11.1
(-3) 		88.4
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 80
(-0.5)
A 		60.1
(-2)
A 		61.4
(-1.9)
A 		46.2
(-3)
A 		65.8
(-1.5)
A 		125.8
(3)
A 		80
B 35.1
(-3)
A 		76.8
(0.2)
A 		36.3
(-2.9)
A 		66.2
(-0.6)
A 		60.4
(-1.1)
A 		113.2
(3)
P 		78
C 45.2
(-3)
A 		94.9
(3)
A 		47.2
(-2.8)
A 		93.3
(2.8)
A 		59
(-1.3)
A 		92.2
(2.7)
A 		50
avr 53.4
(-2.5) 		77.3
(-0.2) 		48.3
(-3) 		68.6
(-1) 		61.7
(-1.7) 		110.4
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.8
(2.4)
A 		13.4
(2.8)
A 		3.3
(-3)
A 		13.8
(3)
A 		11
B 20.3
(3)
A 		9.6
(-0.7)
A 		3
(-3)
A 		13.1
(0.5)
A 		17
C 8.5
(-0.8)
A 		3.4
(-2.7)
A 		2.7
(-3)
A 		18.4
(3)
A 		16
avr 13.9
(2.4) 		8.8
(-0.1) 		3
(-3) 		15.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 14.7
(-2)
A 		21.4
(0.1)
A 		13.4
(-2.5)
A 		11.7
(-3)
A 		19.8
(-0.4)
A 		30.6
(3)
A 		19
B 12.2
(-2.4)
A 		25.6
(0)
A 		8.8
(-3)
A 		17.5
(-1.4)
A 		24.5
(-0.2)
A 		42.2
(3)
P 		33
C 16.8
(-1.5)
A 		29
(2.4)
A 		12
(-3)
A 		18.8
(-0.8)
A 		19.1
(-0.7)
A 		30.9
(3)
A 		19
avr 14.6
(-2.2) 		25.3
(0.6) 		11.4
(-3) 		16
(-1.8) 		21.1
(-0.5) 		34.6
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186607_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10978
Sequence Type Exemplar sequence
Representative Public ID Y59E9AR.8 NCBI
Target Description Y59E9AR.8 /REP_DB=WormBase Gene ID /WP=CE22665 /TR=Q9N2L8 /GB=AAF60825.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068352(11), NM_068353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068352 NCBI Caenorhabditis elegans Y59E9AR.2 (Y59E9AR.2) mRNA, complete cds. 11/11 None
NM_068353 NCBI Caenorhabditis elegans Y59E9AR.8 (Y59E9AR.8) mRNA, complete cds. 11/11 None
SNAP00000034131 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5243050:5244977:1 11/11 None
SNAP00000034132 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5246223:5248150:-1 11/11 None
GENEFINDER00000034143 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5246223:5248150:-1 11/11 None
GENEFINDER00000034144 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5243050:5244977:1 11/11 None
Y59E9AR.2 ENSEMBL cdna:known chromosome:CEL140:IV:5243050:5244977:1 gene:Y59E9AR.2 11/11 None
Y59E9AR.8 ENSEMBL cdna:known chromosome:CEL140:IV:5246223:5248150:-1 gene:Y59E9AR.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5243055-5244983(+) 100.0 100.0
chrIV:5246228-5248156(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y59E9AR.2
Y59E9AR.8
Entrez Gene 190418 Entrez gene
190423 Entrez gene
SwissProt Q9N2L8 EMBL-EBI
WormBase CE22665 Wormbase
CE22665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60825 Hypothetical protein Y59E9AR.8 [Caenorhabditis elegans] gb|AAF60827.1| Hypothetical protein Y59E9AR.2 [Caenorhabditis elegans] ref|NP_500754.1| Y59E9AR.8 [Caenorhabditis elegans] ref|NP_500753.1| Y59E9AR.2 [Caenorhabditis elegans] 0.0
blast CAE72816 Hypothetical protein CBG20097 [Caenorhabditis briggsae] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:186607_S_AT
tcagtccagcgttcacaccggacaatgaattggaaatttgtgatttagttagactggttc
tggcggcagacgaagtcagaaggaacgatgaaaactcgaattgtatgggataccaattgt
tagcgtcagatcaagtggtgattatgagcaagttggcaaaaatgattggtaaagactcga
tgatcgatctttgtaatcgtgctcgcgagctcaacacatctaccaatcccaactaccgca
acattttcaacaatcagaagcaatccacttcaatgggtcgtgtctatcaaagtccttatc
acttcaatgacccatttctgcctgattacgttgcacctccacctccgattgctttagaat
ctgttgcgaaacctacgagaattggtcataggcattcaatttatcgggttggagaagata
aaagtacggagctggagaatggagataatcggagaaaagcagtgtatcgaggtgctctta
tagatgctcttcagcccatgtttggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTCCAGCGTTCACACCGGACAA 622 621 575 Antisense
AGTTAGACTGGTTCTGGCGGCAGAC 420 63 621 Antisense
GTAATCGTGCTCGCGAGCTCAACAC 84 463 767 Antisense
CCAACTACCGCAACATTTTCAACAA 372 275 803 Antisense
GCAATCCACTTCAATGGGTCGTGTC 295 321 834 Antisense
GGGTCGTGTCTATCAAAGTCCTTAT 196 497 849 Antisense
ATCACTTCAATGACCCATTTCTGCC 686 27 872 Antisense
ATTTCTGCCTGATTACGTTGCACCT 162 17 888 Antisense
CTCCACCTCCGATTGCTTTAGAATC 156 237 911 Antisense
GAGGTGCTCTTATAGATGCTCTTCA 298 403 1043 Antisense
ATGCTCTTCAGCCCATGTTTGGATT 448 31 1058 Antisense
Sequence Source Affymetrix Proprietary Database