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[186606_at]

Description F16G10.13 /REP_DB=WormBase Gene ID /WP=CE19401 /TR=O76597 /GB=AAC26280.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 3.8
(-3)
A 		33.4
(3)
A 		26.3
(1.6)
A 		27
(1.7)
A 		30
B 22.5
(2.1)
A 		25.9
(3)
A 		23.7
(2.4)
A 		3.3
(-3)
A 		23
C 14
(-1.1)
A 		39.5
(3)
A 		2.2
(-3)
A 		26.2
(0.9)
A 		37
avr 13.4
(-3) 		32.9
(3) 		17.4
(-1.8) 		18.8
(-1.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 53
(3)
A 		13.6
(-2.1)
A 		6.4
(-3)
A 		19.2
(-1.4)
A 		46.5
(2.2)
A 		10.1
(-2.5)
A 		47
B 0.7
(-3)
A 		15
(3)
A 		5.2
(-1.1)
A 		5
(-1.2)
A 		11.5
(1.5)
A 		0.8
(-3)
A 		14
C 11.2
(-0.1)
A 		2.2
(-2.9)
A 		4.2
(-2.3)
A 		21.3
(3)
A 		4
(-2.4)
A 		2
(-3)
A 		19
avr 21.6
(3) 		10.3
(-0.9) 		5.3
(-2.7) 		15.2
(0.8) 		20.7
(2.7) 		4.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.4
(-3)
A 		7.3
(3)
A 		6.9
(2.6)
A 		4
(-0.4)
A 		6
B 7.2
(3)
A 		6.4
(2.3)
A 		5.5
(1.4)
A 		0.7
(-3)
A 		7
C 4.6
(-0.8)
A 		11.4
(3)
A 		0.8
(-3)
A 		4.4
(-1)
A 		11
avr 4.4
(-1.4) 		8.4
(3) 		4.4
(-1.4) 		3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.8
(1)
A 		4.8
(-1.4)
A 		1.4
(-3)
A 		4.9
(-1.3)
A 		14
(3)
A 		2.5
(-2.5)
A 		13
B 0.2
(-3)
A 		5
(3)
A 		1.3
(-1.6)
A 		1.3
(-1.6)
A 		4.7
(2.6)
A 		0.3
(-2.9)
A 		5
C 4.1
(2.7)
A 		0.7
(-3)
A 		1.1
(-2.3)
A 		4.3
(3)
A 		1.3
(-2)
A 		0.7
(-3)
A 		4
avr 4.7
(0.8) 		3.5
(-0.5) 		1.3
(-2.9) 		3.5
(-0.5) 		6.7
(3) 		1.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4516
Sequence Type Exemplar sequence
Representative Public ID F16G10.13 NCBI
Target Description F16G10.13 /REP_DB=WormBase Gene ID /WP=CE19401 /TR=O76597 /GB=AAC26280.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061865 NCBI Caenorhabditis elegans F16G10.13 (F16G10.13) mRNA, complete cds. 11/11 None
SNAP00000023124 ENSEMBL cdna:SNAP chromosome:CEL140:II:2394917:2395899:-1 9/11 None
GENEFINDER00000023132 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2394917:2395899:-1 11/11 None
F16G10.13 ENSEMBL cdna:known chromosome:CEL140:II:2394917:2395965:-1 gene:F16G10.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2394915-2395964(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.13
Entrez Gene 184586 Entrez gene
SwissProt O76597 EMBL-EBI
WormBase CE19401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 1.0E-108
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 3.0E-95
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 2.0E-91
blast AAA80369 Hypothetical protein F47B7.5 [Caenorhabditis elegans] ref|NP_508650.1| F47B7.5 [Caenorhabditis elegans] 2.0E-65
blast AAA80369 Hypothetical protein F47B7.5 [Caenorhabditis elegans] ref|NP_508650.1| F47B7.5 [Caenorhabditis elegans] 3.0E-65
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 3.0E-63
blast AAA80369 Hypothetical protein F47B7.5 [Caenorhabditis elegans] ref|NP_508650.1| F47B7.5 [Caenorhabditis elegans] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 2.1E-76
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 2.6E-63
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 2.1E-76
Sequence
Target Sequence 
>C. ELEGANS:186606_AT
gagtacattgtctcctgagcaaagcacaatggctcctggagaaatcacattggctcctga
gcaaagtacagtgactcctgaggaaggtacaatggctcccgaagataccacgatggctcc
tggaggtgtgtctactccagagacctcagaggaaaccgaggcacctgaggtaacgatgat
gacaacaattgcaatggaatcatcaaccgtgacagaagaaacatgcccaacatttacaac
caagtgtcccgatttatcagcactgcttagggatggtatgatggtccaagtggtagatgg
ctgcgctgttttctcttgtcccgaagatctatttccatatgctcttggttcaattgaaga
aagcgaaataacaggcctttcaatacctgctggtgtaactaactatgtagtccgaggacc
atatgaaatagaagagttaggtggcggcactgtaaatgattactatgggctctcatgtga
aaacaataagttgatagcctcgatatatccacgtggaattgctgttggattcacgactgc
aggcgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACATTGTCTCCTGAGCAAAGC 514 399 108 Antisense
GAGAAATCACATTGGCTCCTGAGCA 391 393 146 Antisense
GAGCAAAGTACAGTGACTCCTGAGG 540 389 166 Antisense
CCTGAGGAAGGTACAATGGCTCCCG 639 263 184 Antisense
GACCTCAGAGGAAACCGAGGCACCT 318 383 249 Antisense
CCCGATTTATCAGCACTGCTTAGGG 212 259 355 Antisense
GGGATGGTATGATGGTCCAAGTGGT 432 495 377 Antisense
TTTTCTCTTGTCCCGAAGATCTATT 319 675 416 Antisense
AACAGGCCTTTCAATACCTGCTGGT 189 135 477 Antisense
ACCTGCTGGTGTAACTAACTATGTA 358 87 492 Antisense
TTGGATTCACGACTGCAGGCGCAGA 340 693 632 Antisense
Sequence Source Affymetrix Proprietary Database