[Home] | [Total List]

[186605_s_at]

Description Y17G7B.10A /REP_DB=WormBase Gene ID /WP=CE19043 /TR=Q9XXI6 /GB=CAA19455.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 86      6grp_total > 39      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1490
1 2 3 4 range
A 1551.9
(-0.4)
P 		1519.2
(-0.6)
P 		1028.8
(-3)
P 		2231.8
(3)
P 		1203
B 1535.8
(-1.3)
P 		1333.6
(-2.2)
P 		1158.9
(-3)
P 		2519.2
(3)
P 		1360
C 1492.1
(-1.2)
P 		1293.4
(-2.3)
P 		1157.1
(-3)
P 		2252.1
(3)
P 		1095
avr 1526.6
(-1) 		1382.1
(-1.7) 		1114.9
(-3) 		2334.4
(3) 		1220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 1151.8
(2.9)
P 		1000.9
(0.4)
P 		796.5
(-3)
P 		965.7
(-0.2)
P 		1012.7
(0.6)
P 		1158.3
(3)
P 		362
B 1311
(3)
P 		847.2
(-3)
P 		851.8
(-2.9)
P 		848.4
(-3)
P 		1125.2
(0.6)
P 		1071.1
(-0.1)
P 		464
C 1177.2
(2.5)
P 		887.6
(-0.8)
P 		913.6
(-0.5)
P 		696.7
(-3)
P 		1225.5
(3)
P 		1209.2
(2.8)
P 		529
avr 1213.3
(3) 		911.9
(-1.8) 		854
(-2.7) 		836.9
(-3) 		1121.1
(1.5) 		1146.2
(1.9) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 565.1
(3)
P 		329.8
(-1.8)
P 		268.9
(-3)
P 		326.7
(-1.8)
P 		296
B 489.8
(1.9)
P 		329.4
(-1.6)
P 		268.5
(-3)
P 		536.9
(3)
P 		268
C 493.9
(3)
P 		371.9
(-3)
P 		403.3
(-1.5)
P 		379.7
(-2.6)
P 		122
avr 516.3
(3) 		343.7
(-2.1) 		313.6
(-3) 		414.4
(-0) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 212.3
(-1.7)
P 		356
(3)
P 		173.5
(-3)
P 		244.9
(-0.7)
P 		305.6
(1.3)
P 		282
(0.6)
P 		183
B 456.2
(3)
P 		282
(-1.2)
P 		206.8
(-3)
P 		224.7
(-2.6)
P 		457.2
(3)
P 		399.4
(1.6)
P 		250
C 436.3
(3)
P 		270.8
(-0.4)
P 		232.5
(-1.1)
P 		140.1
(-3)
P 		396.6
(2.2)
P 		404.8
(2.4)
P 		296
avr 368.3
(2.4) 		302.9
(0.3) 		204.3
(-3) 		203.2
(-3) 		386.5
(3) 		362.1
(2.2) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186605_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3569
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.10A NCBI
Target Description Y17G7B.10A /REP_DB=WormBase Gene ID /WP=CE19043 /TR=Q9XXI6 /GB=CAA19455.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064164(11), NM_064165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064164 NCBI Caenorhabditis elegans Y17G7B.10a (Y17G7B.10) mRNA, complete cds. 11/11 A 
NM_064165 NCBI Caenorhabditis elegans Y17G7B.10b (Y17G7B.10) mRNA, complete cds. 11/11 A 
SNAP00000030324 ENSEMBL cdna:SNAP chromosome:CEL140:II:12054369:12060943:1 11/11 None
GENEFINDER00000030397 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12042885:12060067:1 11/11 None
Y17G7B.10a.1 ENSEMBL cdna:known chromosome:CEL140:II:12049480:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.6 ENSEMBL cdna:known chromosome:CEL140:II:12049486:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.4 ENSEMBL cdna:known chromosome:CEL140:II:12049486:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10b.1 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059757:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.5 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.3 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10b.2 ENSEMBL cdna:known chromosome:CEL140:II:12054238:12059753:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.2 ENSEMBL cdna:known chromosome:CEL140:II:12054386:12059673:1 gene:Y17G7B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12049212-12059670(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19456 Hypothetical protein Y17G7B.10b [Caenorhabditis elegans] ref|NP_496566.1| Y17G7B.10b [Caenorhabditis elegans] 0.0
blast CAA19455 Hypothetical protein Y17G7B.10a [Caenorhabditis elegans] ref|NP_496565.2| Y17G7B.10a [Caenorhabditis elegans] 0.0
blast CAE73550 Hypothetical protein CBG21019 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 9.7E-85
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 5.3E-116
Sequence
Target Sequence 
>C. ELEGANS:186605_S_AT
aggaatgcatgtcactatcgccacctgtcaaaaaacgaatgatctcagaagccgtcgaaa
ttccagaagtggaaaaagagacagtagaactaccggttcttgcactcaacgaagtattca
ttggtgaaagtctatcatcacgtgtgtcatattatgaaattggaattaacgatgctcaaa
tgctcaaacaaaagagttcgggaatcacgatttgtacaggaacgggctccacgtcgtgga
atttcaatatcaataagctcaccgagcaatgcgttcaggatttgatgaaaattgttgcgg
agcactgtaatctgccacagatcccgcatggggataagaatgctgttagcgagatttgca
cgaaatttaatcaacaattgatttttgatcctgatcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAATGCATGTCACTATCGCCACC 308 55 944 Antisense
AACGAATGATCTCAGAAGCCGTCGA 441 143 977 Antisense
GAAGCCGTCGAAATTCCAGAAGTGG 285 345 991 Antisense
TACCGGTTCTTGCACTCAACGAAGT 580 647 1034 Antisense
GAAAGTCTATCATCACGTGTGTCAT 293 361 1069 Antisense
GAGTTCGGGAATCACGATTTGTACA 111 397 1137 Antisense
TTTGTACAGGAACGGGCTCCACGTC 104 609 1154 Antisense
AGCTCACCGAGCAATGCGTTCAGGA 72 79 1199 Antisense
GTTGCGGAGCACTGTAATCTGCCAC 435 439 1237 Antisense
TCTGCCACAGATCCCGCATGGGGAT 130 609 1254 Antisense
CAATTGATTTTTGATCCTGATCGCA 288 179 1318 Antisense
Sequence Source Affymetrix Proprietary Database