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[186604_s_at]

Description Y38C1AB.5 /REP_DB=WormBase Gene ID /WP=CE25252 /TR=Q9N2M0 /GB=AAF60500.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 52      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 945
1 2 3 4 range
A 274.3
(-2.4)
P 		1045.8
(2.6)
P 		1113.6
(3)
P 		179.6
(-3)
P 		934
B 416.8
(-1.3)
P 		1031.9
(3)
P 		851.7
(1.7)
P 		168.7
(-3)
P 		863
C 298
(-2.8)
P 		1024.4
(3)
P 		938
(2.3)
P 		270.6
(-3)
P 		754
avr 329.7
(-2.1) 		1034
(3) 		967.8
(2.5) 		206.3
(-3) 		828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1396
1 2 3 4 5 6 range
A 366.4
(-2.9)
P 		1242.8
(2.1)
P 		1095.9
(1.2)
P 		1409
(3)
P 		730.9
(-0.8)
P 		346.6
(-3)
P 		1062
B 308
(-2.6)
P 		967.1
(1.8)
P 		1147
(3)
P 		1054.3
(2.4)
P 		766.2
(0.5)
P 		243.1
(-3)
P 		904
C 477.3
(-2.2)
P 		934.9
(-0.2)
P 		1639.4
(3)
P 		1358.3
(1.7)
P 		922.7
(-0.2)
P 		299.9
(-3)
P 		1340
avr 383.9
(-2.5) 		1048.3
(1.5) 		1294.1
(3) 		1273.9
(2.9) 		806.6
(0.1) 		296.5
(-3) 		998
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 99.9
(-1.3)
P 		227
(1.5)
P 		291.1
(3)
P 		26.3
(-3)
P 		265
B 132.9
(-0.3)
P 		254.9
(3)
P 		197.4
(1.4)
P 		35.9
(-3)
P 		219
C 98.6
(-1.9)
P 		294.5
(2.3)
P 		326.9
(3)
P 		45.6
(-3)
P 		281
avr 110.5
(-1.1) 		258.8
(2.7) 		271.8
(3) 		35.9
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 67.5
(-3)
P 		442
(3)
P 		238.7
(-0.3)
P 		357.4
(1.6)
P 		220.5
(-0.5)
P 		84.4
(-2.7)
P 		375
B 107.2
(-2.6)
P 		321.9
(3)
P 		278.5
(1.9)
P 		279.2
(1.9)
P 		311.3
(2.7)
P 		90.6
(-3)
P 		231
C 176.9
(-1.6)
P 		285.3
(0.5)
P 		417.3
(3)
P 		273.2
(0.3)
P 		298.6
(0.8)
P 		100.4
(-3)
P 		317
avr 117.2
(-2.4) 		349.7
(3) 		311.5
(2.1) 		303.3
(1.9) 		276.8
(1.3) 		91.8
(-3) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186604_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11171
Sequence Type Exemplar sequence
Representative Public ID Y38C1AB.5 NCBI
Target Description Y38C1AB.5 /REP_DB=WormBase Gene ID /WP=CE25252 /TR=Q9N2M0 /GB=AAF60500.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067456(11), NM_067450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067456 NCBI Caenorhabditis elegans Y38C1AB.1 (Y38C1AB.1) mRNA, complete cds. 11/11 None
NM_067450 NCBI Caenorhabditis elegans Y38C1AB.5 (Y38C1AB.5) mRNA, complete cds. 11/11 None
GENEFINDER00000032147 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8765:11070:-1 11/11 None
GENEFINDER00000032148 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:36809:39114:1 11/11 None
Y38C1AB.5 ENSEMBL cdna:known chromosome:CEL140:IV:8970:11070:-1 gene:Y38C1AB.5 11/11 None
Y38C1AB.1 ENSEMBL cdna:known chromosome:CEL140:IV:36809:39114:1 gene:Y38C1AB.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032133 8/11 Cross Hyb Matching Probes None
SNAP00000032144 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:36808-38909(+) 92.24 92.24
chrIV:8969-11070(-) 92.24 92.24
Public Domain and Genome References
Gene Title

Ensembl Y38C1AB.5
Y38C1AB.1
Entrez Gene 176819 Entrez gene
176823 Entrez gene
SwissProt Q9N2M0 EMBL-EBI
Q7KX49 EMBL-EBI
WormBase CE18179 Wormbase
CE32520 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60497 Hypothetical protein Y38C1AB.1 [Caenorhabditis elegans] ref|NP_499857.3| Y38C1AB.1 [Caenorhabditis elegans] 1.0E-156
blast AAF60500 Hypothetical protein Y38C1AB.5 [Caenorhabditis elegans] ref|NP_499851.2| Y38C1AB.5 [Caenorhabditis elegans] 1.0E-100
blast CAE58495 Hypothetical protein CBG01640 [Caenorhabditis briggsae] 6.0E-90
blast AAF60500 Hypothetical protein Y38C1AB.5 [Caenorhabditis elegans] ref|NP_499851.2| Y38C1AB.5 [Caenorhabditis elegans] 7.0E-88
blast AAF60497 Hypothetical protein Y38C1AB.1 [Caenorhabditis elegans] ref|NP_499857.3| Y38C1AB.1 [Caenorhabditis elegans] 1.0E-77
Sequence
Target Sequence 
>C. ELEGANS:186604_S_AT
tatgccttattcacactgcaacaccgagtcacgaaacacgggcaaaaacaatactcgaaa
cgtgggttcaacactgcgatgacttcttgttctttacggattcgaaaatgaacgattcga
tcccacatatttattatccgttattgaactcaagagatcactcgtgggagaagattagga
gggtttttaaatacgtacgtgataagatcaccaaaaagtatgactggtattatcgagccg
acgacgacacgtacgcactcatgcataacatgcgaacgcttctcgacaactattcgccca
caaaacatcactatctcgggctgcagtggaactttttcacagtaagtctatcgaaaatag
aaaaaaaatcatgctcatttttttcatgtttcccaaaaaaaannnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacgtggtttcaacgacgggtca
tcatatatcttatcaaggcctacaatggaggctttcaacgaggtgatgctggatccggac
aggtgtccggatcatcatcgagcagagg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCCTTATTCACACTGCAACACC 622 657 80 Antisense
GTGGGTTCAACACTGCGATGACTTC 347 487 141 Antisense
GACTTCTTGTTCTTTACGGATTCGA 303 371 160 Antisense
AACGATTCGATCCCACATATTTATT 75 145 190 Antisense
ATGACTGGTATTATCGAGCCGACGA 170 45 299 Antisense
ACGACACGTACGCACTCATGCATAA 217 91 323 Antisense
GCATAACATGCGAACGCTTCTCGAC 278 309 342 Antisense
TTCTCGACAACTATTCGCCCACAAA 492 693 359 Antisense
ACAAAACATCACTATCTCGGGCTGC 155 113 379 Antisense
GTGATGCTGGATCCGGACAGGTGTC 672 481 602 Antisense
TGTCCGGATCATCATCGAGCAGAGG 414 557 623 Antisense
Sequence Source Affymetrix Proprietary Database