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[186603_at]

Description F33H1.3 /REP_DB=WormBase Gene ID /WP=CE01569 /TR=SW:Q09556 /GB=CAA88698.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 97      6grp_total > 87      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 649.2
(-1.3)
P 		461.1
(-3)
P 		682.8
(-1)
P 		1114.9
(3)
P 		654
B 578.8
(-3)
P 		660.4
(-1.8)
P 		767.5
(-0.1)
P 		974.2
(3)
P 		395
C 642.6
(-2.6)
P 		623.1
(-3)
P 		702.8
(-1.5)
P 		944.1
(3)
P 		321
avr 623.5
(-2.4) 		581.5
(-3) 		717.7
(-1.1) 		1011.1
(3) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 830
1 2 3 4 5 6 range
A 759.4
(-2.5)
P 		791.6
(-2.3)
P 		690.1
(-3)
P 		783.5
(-2.3)
P 		1077.3
(-0.2)
P 		1520.2
(3)
P 		830
B 759.2
(-2.6)
P 		731
(-2.8)
P 		712.1
(-3)
P 		1008.3
(-0.4)
P 		907.1
(-1.3)
P 		1384.6
(3)
P 		673
C 700.5
(-3)
P 		726.8
(-2.8)
P 		801.9
(-2.2)
P 		898.7
(-1.4)
P 		1087.7
(0)
P 		1465.9
(3)
P 		765
avr 739.7
(-3) 		749.8
(-2.9) 		734.7
(-3) 		896.8
(-1.7) 		1024
(-0.6) 		1456.9
(3) 		722
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 236.4
(3)
P 		100.1
(-3)
P 		178.5
(0.5)
P 		163.2
(-0.2)
P 		136
B 184.6
(-0.1)
P 		163.1
(-3)
P 		177.8
(-1)
P 		207.6
(3)
P 		45
C 212.7
(0.7)
P 		179.1
(-1.6)
P 		245
(3)
P 		159.2
(-3)
P 		86
avr 211.2
(3) 		147.4
(-3) 		200.4
(2) 		176.7
(-0.2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 140
(-3)
P 		281.5
(0.7)
P 		150.3
(-2.7)
P 		198.7
(-1.5)
P 		325.1
(1.8)
P 		370.1
(3)
P 		230
B 264.2
(-1.4)
P 		243.3
(-1.8)
P 		172.9
(-3)
P 		267.1
(-1.4)
P 		368.5
(0.4)
P 		516.3
(3)
P 		343
C 259.7
(-1.5)
P 		221.8
(-2.2)
P 		204.1
(-2.5)
P 		180.7
(-3)
P 		352
(0.3)
P 		490.7
(3)
P 		310
avr 221.3
(-2) 		248.9
(-1.5) 		175.8
(-3) 		215.5
(-2.2) 		348.5
(0.7) 		459
(3) 		283
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3028
Sequence Type Exemplar sequence
Representative Public ID F33H1.3 NCBI
Target Description F33H1.3 /REP_DB=WormBase Gene ID /WP=CE01569 /TR=SW:Q09556 /GB=CAA88698.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063792 NCBI Caenorhabditis elegans F33H1.3 (F33H1.3) mRNA, complete cds. 11/11 None
SNAP00000027289 ENSEMBL cdna:SNAP chromosome:CEL140:II:10172836:10174191:1 11/11 None
GENEFINDER00000027298 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10172836:10174191:1 11/11 None
F33H1.3 ENSEMBL cdna:known chromosome:CEL140:II:10172836:10174191:1 gene:F33H1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10172832-10174188(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H1.3
Entrez Gene 174579 Entrez gene
SwissProt Q09556 EMBL-EBI
WormBase CE01569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88698 Hypothetical protein F33H1.3 [Caenorhabditis elegans] ref|NP_496193.1| F33H1.3 [Caenorhabditis elegans] sp|Q09556|YQW3_CAEEL Hypothetical protein F33H1.3 from chromosome II 1.0E-165
blast CAE57851 Hypothetical protein CBG00888 [Caenorhabditis briggsae] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:186603_AT
ataatcaactacttgctcctgctatgataaaacgtaaagtggaatttcaacttcctccta
gacctgttcgtgtagctggacaaaagcctcctgggccgccttgtggattggctccaaatt
tcagtgacagcgaagaagaagaagaggaagtgcacgatgatcactatgacgacatcgatc
ttgcgcccgtacctattcccgaattcgacaacccgtaccagccaattcatagaaattacg
gacctccatcctcatataactcaatgccaaccagaatgccgcaccatcatcaccaccatc
acccacatgcgagttctcattacaatccaatgggtttccaaaaccatcacgaagaagctg
ttatttcgtcggctccacaaattaatcgcagtaatgaacctgctgctccagcaacacttt
ctgctgctcctgaactacgaaacttacgacgagaaactgtcaaattagtgccggcacaat
tgctccgtcgtccaggagacaacaagactatcgtcccacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATCAACTACTTGCTCCTGCTAT 107 27 470 Antisense
GTGGAATTTCAACTTCCTCCTAGAC 182 491 508 Antisense
CTCCTAGACCTGTTCGTGTAGCTGG 630 235 524 Antisense
CTATGACGACATCGATCTTGCGCCC 17 225 633 Antisense
TAGAAATTACGGACCTCCATCCTCA 261 641 699 Antisense
TCACCCACATGCGAGTTCTCATTAC 115 627 768 Antisense
AAGAAGCTGTTATTTCGTCGGCTCC 256 153 821 Antisense
CGTCGGCTCCACAAATTAATCGCAG 676 245 836 Antisense
TTCTGCTGCTCCTGAACTACGAAAC 205 693 888 Antisense
ATTGCTCCGTCGTCCAGGAGACAAC 232 7 948 Antisense
GACAACAAGACTATCGTCCCACGAC 654 363 967 Antisense
Sequence Source Affymetrix Proprietary Database