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[186602_at]

Description F08D12.10 /REP_DB=WormBase Gene ID /WP=CE09243 /TR=P91233 /GB=AAB37930.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 5.1
(-3)
A 		30.3
(1.9)
A 		6.8
(-2.7)
A 		35.8
(3)
A 		31
B 11.8
(-3)
A 		14.4
(-2.8)
A 		18.1
(-2.4)
A 		74.8
(3)
A 		63
C 2.8
(-3)
A 		6.5
(-2.7)
A 		2.1
(-3)
A 		93.5
(3)
A 		91
avr 6.6
(-3) 		17.1
(-2) 		9
(-2.8) 		68
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 3.3
(-2.9)
A 		1.7
(-3)
A 		22.3
(-1.1)
A 		9.4
(-2.3)
A 		6.6
(-2.5)
A 		65.7
(3)
A 		64
B 5.3
(-2.5)
A 		6.7
(-2.4)
A 		1.2
(-3)
A 		3.6
(-2.7)
A 		9
(-2.1)
A 		54.3
(3)
M 		53
C 16.3
(-0.6)
A 		21.1
(0.2)
A 		6.6
(-2.4)
A 		9.8
(-1.8)
A 		3
(-3)
A 		36.5
(3)
P 		34
avr 8.3
(-2.7) 		9.8
(-2.5) 		10
(-2.5) 		7.6
(-2.8) 		6.2
(-3) 		52.2
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-3)
A 		6.6
(3)
A 		1.8
(-3)
A 		5.2
(1.3)
A 		5
B 3.8
(-2.9)
A 		3.5
(-3)
A 		4.2
(-2.7)
A 		15.9
(3)
A 		12
C 0.9
(-2.9)
A 		1.9
(-2.5)
A 		0.7
(-3)
A 		15.8
(3)
A 		15
avr 2.2
(-3) 		4
(-1.9) 		2.2
(-3) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.6
(-3)
A 		4.9
(-1.3)
A 		2.4
(-2.3)
A 		2
(-2.5)
A 		16
(3)
A 		15
B 1.8
(-2.5)
A 		2.2
(-2.4)
A 		0.3
(-3)
A 		1
(-2.8)
A 		3.7
(-2)
A 		20.2
(3)
M 		20
C 6
(-0.3)
A 		6.4
(-0.1)
A 		1.7
(-2.6)
A 		2
(-2.5)
A 		1
(-3)
A 		12.2
(3)
P 		11
avr 2.8
(-2.6) 		3.1
(-2.5) 		2.3
(-2.8) 		1.8
(-3) 		2.2
(-2.8) 		16.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5248
Sequence Type Exemplar sequence
Representative Public ID F08D12.10 NCBI
Target Description F08D12.10 /REP_DB=WormBase Gene ID /WP=CE09243 /TR=P91233 /GB=AAB37930.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061958 NCBI Caenorhabditis elegans F08D12.10 (F08D12.10) mRNA, complete cds. 11/11 None
SNAP00000023715 ENSEMBL cdna:SNAP chromosome:CEL140:II:2771174:2773612:-1 11/11 None
GENEFINDER00000023733 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2772501:2773612:-1 11/11 None
F08D12.10 ENSEMBL cdna:known chromosome:CEL140:II:2772501:2773612:-1 gene:F08D12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2772499-2773611(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-9
Ensembl F08D12.10
Entrez Gene 173622 Entrez gene
SwissProt P91233 EMBL-EBI
WormBase CE09243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37930 Hypothetical protein F08D12.10 [Caenorhabditis elegans] ref|NP_494359.1| F08D12.10 [Caenorhabditis elegans] 0.0
blast AAB37931 Hypothetical protein F08D12.9 [Caenorhabditis elegans] ref|NP_494358.1| F08D12.9 [Caenorhabditis elegans] 0.0
blast AAB37931 Hypothetical protein F08D12.9 [Caenorhabditis elegans] ref|NP_494358.1| F08D12.9 [Caenorhabditis elegans] 1.0E-118
blast AAB37934 Hypothetical protein F08D12.11 [Caenorhabditis elegans] ref|NP_494360.1| F08D12.11 [Caenorhabditis elegans] 9.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.4E-7
Sequence
Target Sequence 
>C. ELEGANS:186602_AT
accgtgctcagtctggctgatacaaggcagataggcgaagctttaaatggattaaaagtg
acaagcatggatttctggtgttacacggaagatcgagtttataacatcagaagaaacttg
gagactgttggcttaattttcgcacaccccgactcagagcatttctccaaactgtctact
caaaagattctttcggaaaaccagacaagcgtgcttcatcgttcgccggattttgcatta
atggctgaaatgagatatttcgtcgacgaggcttcgtatgcctgtattactttgaacgat
ctcttagtgagcaactgcaccaaactcatcataacggattctacattaaaatcggaagaa
ttgaacatttttcttaagcactggatcaatggatctatacagacatgcgaattcttgaaa
ctagagacgtctgtccgaacccagtggaatatggagaccgtgttgaaaggcgttgcgcat
aaaaccgcatcaaaagtgaaggatggtgcaccaggagcgagagacatgtttataatccca
cggatcgatctgccaaatttatccttgacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTGCTCAGTCTGGCTGATACAA 296 89 448 Antisense
CTGTTGGCTTAATTTTCGCACACCC 369 237 572 Antisense
GAGCATTTCTCCAAACTGTCTACTC 492 389 604 Antisense
CAGACAAGCGTGCTTCATCGTTCGC 620 203 649 Antisense
GTCGACGAGGCTTCGTATGCCTGTA 158 475 709 Antisense
GCCTGTATTACTTTGAACGATCTCT 8 283 727 Antisense
GCAACTGCACCAAACTCATCATAAC 27 321 758 Antisense
GAAACTAGAGACGTCTGTCCGAACC 51 357 864 Antisense
GACCGTGTTGAAAGGCGTTGCGCAT 385 381 903 Antisense
ATAATCCCACGGATCGATCTGCCAA 443 25 979 Antisense
GATCTGCCAAATTTATCCTTGACGT 301 419 994 Antisense
Sequence Source Affymetrix Proprietary Database