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[186599_at]

Description Y116A8C.10 /REP_DB=WormBase Gene ID /WP=CE23321 /TR=Q9U2V7 /GB=CAB55120.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_total > 07      4grp_total > 41      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 153.2
(-3)
P 		215.4
(2.2)
P 		225.6
(3)
P 		176.6
(-1.1)
P 		72
B 148
(-3)
P 		205
(1.5)
P 		224
(3)
P 		159.6
(-2.1)
P 		76
C 131.7
(-3)
P 		169.8
(-0.5)
P 		155.7
(-1.4)
P 		224.1
(3)
P 		92
avr 144.3
(-3) 		196.7
(2.5) 		201.8
(3) 		186.8
(1.4) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 213.7
(3)
P 		124.9
(-3)
P 		136.3
(-2.2)
P 		163.3
(-0.4)
P 		133.2
(-2.4)
P 		124.3
(-3)
P 		89
B 173.1
(3)
P 		144.3
(0.4)
P 		144.9
(0.4)
P 		108.7
(-2.9)
A 		123.6
(-1.5)
P 		107.1
(-3)
P 		66
C 196.7
(3)
P 		159.5
(0.1)
P 		146.7
(-0.9)
A 		123.8
(-2.7)
P 		125.2
(-2.6)
P 		120.2
(-3)
P 		77
avr 194.5
(3) 		142.9
(-1) 		142.6
(-1) 		131.9
(-1.9) 		127.3
(-2.2) 		117.2
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 55.8
(2.4)
P 		46.8
(0.8)
P 		59
(3)
P 		25.9
(-3)
P 		33
B 47.2
(1.4)
P 		50.6
(2.6)
P 		51.9
(3)
P 		34
(-3)
P 		18
C 43.6
(-0.9)
P 		48.8
(1)
P 		54.3
(3)
P 		37.8
(-3)
P 		17
avr 48.9
(1.3) 		48.7
(1.3) 		55.1
(3) 		32.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 39.4
(1)
P 		44.4
(3)
P 		29.7
(-3)
P 		41.4
(1.8)
P 		40.2
(1.3)
P 		30.3
(-2.8)
P 		15
B 60.2
(3)
P 		48
(0.7)
P 		35.2
(-1.8)
P 		28.8
(-3)
A 		50.2
(1.1)
P 		39.9
(-0.9)
P 		31
C 72.9
(3)
P 		48.7
(-0)
P 		37.3
(-1.5)
A 		24.9
(-3)
P 		40.5
(-1.1)
P 		40.2
(-1.1)
P 		48
avr 57.5
(3) 		47
(0.6) 		34.1
(-2.4) 		31.7
(-3) 		43.6
(-0.2) 		36.8
(-1.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9873
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.10 NCBI
Target Description Y116A8C.10 /REP_DB=WormBase Gene ID /WP=CE23321 /TR=Q9U2V7 /GB=CAB55120.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070608
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004165 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16935562:16939766:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004078 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16935567-16939772(-) 97.92 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE57384 Hypothetical protein CBG00332 [Caenorhabditis briggsae] 2.0E-77
blast CAB55120 Hypothetical protein Y116A8C.10 [Caenorhabditis elegans] ref|NP_503009.2| Y116A8C.10 [Caenorhabditis elegans] 3.0E-28
blast EAA10808 ENSANGP00000013042 [Anopheles gambiae str. PEST] ref|XP_316374.2| ENSANGP00000013042 [Anopheles gambiae str. PEST] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:186599_AT
aaccgtcgtcatggcatggcacgagtatcgagccggcaccccggagcaacgtaccgagct
tctcgagctatgggatattggtggaatggtggctcatcgacaggcggctcaagtgttttt
tgagggagccgttggcgcaattctcgtgcacgatttgacgaataaacggagcgaggagaa
cctcgccacgtggcttacgatgcttgacgggaagcctcggggagcagctccgaagagctc
caaggatccggccgccgtcgcgttgaaagtcgatattgagagttgcaatattcctgtgtt
gattgtgggaacgaaagccgacttggtgccgcataaggggcctgttagctatgataggta
tgatggcctaggaaatgcaaactcggccatcagtgtgtggaagccaagaaatcgccgaaa
aaacagcaaaaaaccgatgaaaattggacgaaaactggtggtcgagaaagagaaagtgaa
aaaattcggccgccaatatttgcgccgtggcctaggtttttctttctcgtcggccagatg
gcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGTCGTCATGGCATGGCACGAG 149 147 636 Antisense
AACGTACCGAGCTTCTCGAGCTATG 210 145 683 Antisense
GTGGAATGGTGGCTCATCGACAGGC 302 491 716 Antisense
ATCGACAGGCGGCTCAAGTGTTTTT 523 33 731 Antisense
TGAGGGAGCCGTTGGCGCAATTCTC 326 567 756 Antisense
TCGCCACGTGGCTTACGATGCTTGA 399 599 818 Antisense
GCCGACTTGGTGCCGCATAAGGGGC 267 285 952 Antisense
ATGCAAACTCGGCCATCAGTGTGTG 442 43 1010 Antisense
AAAATTCGGCCGCCAATATTTGCGC 122 129 1116 Antisense
ATATTTGCGCCGTGGCCTAGGTTTT 43 19 1131 Antisense
CTTTCTCGTCGGCCAGATGGCACAA 360 221 1157 Antisense
Sequence Source Affymetrix Proprietary Database