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[186598_at]

Description C24H12.10 /REP_DB=WormBase Gene ID /WP=CE08364 /TR=O17162 /GB=AAB71206.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 4.1
(-3)
A 		30.9
(1.1)
A 		43.6
(3)
A 		11.5
(-1.9)
A 		40
B 12.2
(-3)
A 		21.8
(-1.3)
A 		46.6
(3)
A 		42.1
(2.2)
A 		34
C 17.6
(1)
P 		22.2
(3)
A 		9.5
(-2.6)
A 		8.5
(-3)
A 		14
avr 11.3
(-3) 		25
(0.8) 		33.2
(3) 		20.7
(-0.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 34.9
(1.8)
A 		32.7
(1.4)
A 		6.6
(-2.7)
A 		42.3
(2.9)
A 		4.7
(-3)
A 		42.7
(3)
A 		38
B 14.5
(-0.8)
A 		23.7
(1.7)
A 		28.7
(3)
A 		6.4
(-3)
A 		12.7
(-1.3)
A 		23.3
(1.5)
A 		22
C 2.9
(-3)
A 		31
(0.3)
A 		4.6
(-2.8)
A 		54.8
(3)
A 		3.9
(-2.9)
A 		2.7
(-3)
A 		52
avr 17.4
(-0.7) 		29.1
(1.8) 		13.3
(-1.6) 		34.5
(3) 		7.1
(-3) 		22.9
(0.5) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-3)
A 		6.7
(0.2)
A 		11.4
(3)
A 		1.7
(-2.9)
A 		10
B 3.9
(-3)
A 		5.4
(-1.7)
A 		10.8
(3)
A 		9
(1.4)
A 		7
C 5.8
(2.3)
P 		6.4
(3)
A 		3.3
(-0.7)
A 		1.4
(-3)
A 		5
avr 3.7
(-3) 		6.2
(0.1) 		8.5
(3) 		4
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.4
(-0.1)
A 		11.6
(3)
A 		1.4
(-3)
A 		10.7
(2.5)
A 		1.4
(-3)
A 		10.4
(2.3)
A 		10
B 5.1
(-0.1)
A 		7.9
(2.3)
A 		7
(1.5)
A 		1.7
(-3)
A 		5.1
(-0.1)
A 		8.7
(3)
A 		7
C 1.1
(-2.9)
A 		9.4
(2)
A 		1.2
(-2.8)
A 		11
(3)
A 		1.3
(-2.8)
A 		0.9
(-3)
A 		10
avr 4.2
(-1.6) 		9.6
(3) 		3.2
(-2.5) 		7.8
(1.5) 		2.6
(-3) 		6.7
(0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4489
Sequence Type Exemplar sequence
Representative Public ID C24H12.10 NCBI
Target Description C24H12.10 /REP_DB=WormBase Gene ID /WP=CE08364 /TR=O17162 /GB=AAB71206.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061332
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061332 NCBI Caenorhabditis elegans C24H12.10 (C24H12.10) mRNA, complete cds. None
C24H12.10 ENSEMBL cdna:known chromosome:CEL140:II:426484:427018:-1 gene:C24H12.10 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:425655-427018(-) 69.0 78.11
Public Domain and Genome References
Gene Title
Ensembl C24H12.10
Entrez Gene 182872 Entrez gene
SwissProt O17162 EMBL-EBI
WormBase CE36792 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71206 Hypothetical protein C24H12.10 [Caenorhabditis elegans] ref|NP_493733.2| C24H12.10 [Caenorhabditis elegans] 8.0E-56
blast AAB71204 Hypothetical protein C24H12.8 [Caenorhabditis elegans] ref|NP_493731.1| C24H12.8 [Caenorhabditis elegans] 5.0E-35
blast NP_493754 T27A1.3 [Caenorhabditis elegans] gb|AAB71044.1| Hypothetical protein T27A1.3 [Caenorhabditis elegans] 8.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493733.2 1 5-27
C24H12.10 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186598_AT
gaggcacgaatacaaggaatcgactgggcaacccgcttcgacgtcaatttttatattaat
ttcttctgcccctcgcccaatttcgttcatttataattttgacttgagatttatgtgtaa
attgtgcttacagtatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtacggcaccattttttgg
ttgcgaaagccaccccaaatttttaattgattcgatgtgtctgtttgaggcaaagctaca
caattttaaag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCACGAATACAAGGAATCGACT 140 405 351 Antisense
CCCGCTTCGACGTCAATTTTTATAT 343 261 382 Antisense
TTTTATATTAATTTCTTCTGCCCCT 535 675 399 Antisense
CTCGCCCAATTTCGTTCATTTATAA 298 233 422 Antisense
ATTTTGACTTGAGATTTATGTGTAA 220 13 446 Antisense
GTAAATTGTGCTTACAGTATTTTTC 561 461 467 Antisense
GTACGGCACCATTTTTTGGTTGCGA 343 459 572 Antisense
TTTGGTTGCGAAAGCCACCCCAAAT 351 667 586 Antisense
TAATTGATTCGATGTGTCTGTTTGA 220 635 614 Antisense
TCGATGTGTCTGTTTGAGGCAAAGC 337 603 622 Antisense
GAGGCAAAGCTACACAATTTTAAAG 329 403 637 Antisense
Sequence Source Affymetrix Proprietary Database