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[186597_at]

Description F19C6.5 /REP_DB=WormBase Gene ID /WP=CE01558 /TR=SW:Q09308 /GB=CAA88049.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 83      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_total > 84      4grp_total > 41      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 205.5
(-3)
P 		329.3
(2.9)
P 		331.1
(3)
P 		300.7
(1.5)
P 		126
B 157.8
(-3)
P 		355.7
(3)
P 		334.7
(2.4)
P 		212
(-1.4)
P 		198
C 215.9
(-3)
P 		411.4
(2.5)
P 		428.3
(3)
P 		286
(-1)
P 		212
avr 193.1
(-3) 		365.5
(3) 		364.7
(3) 		266.2
(-0.5) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 123
(-3)
A 		154.7
(-2.5)
P 		402.6
(1.1)
P 		535.8
(3)
P 		474.6
(2.1)
P 		338.3
(0.1)
P 		413
B 189.9
(-2.6)
P 		161.4
(-3)
P 		335.9
(-0.3)
P 		537.4
(2.8)
P 		548.7
(3)
P 		435.7
(1.2)
P 		387
C 170.2
(-3)
P 		183.8
(-2.8)
P 		346.2
(-0.3)
P 		567.3
(3)
P 		364.5
(-0.1)
P 		353
(-0.2)
P 		397
avr 161
(-3) 		166.6
(-2.9) 		361.6
(0.1) 		546.8
(3) 		462.6
(1.7) 		375.7
(0.3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 74.8
(1.3)
P 		71.5
(0.9)
P 		86.6
(3)
P 		44
(-3)
P 		43
B 50.3
(-2.3)
P 		87.9
(3)
P 		77.5
(1.5)
P 		45.2
(-3)
P 		43
C 71.5
(-1.6)
P 		118.3
(1.2)
P 		149.3
(3)
P 		48.2
(-3)
P 		101
avr 65.5
(-1) 		92.6
(1.8) 		104.5
(3) 		45.8
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 22.7
(-3)
A 		55
(-1.4)
P 		87.7
(0.2)
P 		135.9
(2.6)
P 		143.2
(3)
P 		82.4
(-0)
P 		121
B 66.1
(-2.6)
P 		53.7
(-3)
P 		81.6
(-2)
P 		142.3
(0.1)
P 		222.9
(3)
P 		162.5
(0.9)
P 		169
C 63.1
(-2.3)
P 		56.1
(-3)
P 		88.1
(0.1)
P 		114.1
(2.6)
P 		118
(3)
P 		118.2
(3)
P 		62
avr 50.6
(-3) 		54.9
(-2.8) 		85.8
(-1.1) 		130.8
(1.3) 		161.4
(3) 		121
(0.8) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16525
Sequence Type Exemplar sequence
Representative Public ID F19C6.5 NCBI
Target Description F19C6.5 /REP_DB=WormBase Gene ID /WP=CE01558 /TR=SW:Q09308 /GB=CAA88049.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077274 NCBI Caenorhabditis elegans F19C6.5 (F19C6.5) mRNA, complete cds. 11/11 None
SNAP00000036247 ENSEMBL cdna:SNAP chromosome:CEL140:X:9982485:9984804:-1 9/11 None
GENEFINDER00000036257 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9982485:9984804:-1 11/11 None
F19C6.5 ENSEMBL cdna:known chromosome:CEL140:X:9982485:9984804:-1 gene:F19C6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9982484-9984804(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19C6.5
Entrez Gene 184677 Entrez gene
SwissProt Q09308 EMBL-EBI
WormBase CE01558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88049 Hypothetical protein F19C6.5 [Caenorhabditis elegans] ref|NP_509675.1| F19C6.5 [Caenorhabditis elegans] sp|Q09308|YQR5_CAEEL Hypothetical protein F19C6.5 in chromosome X 1.0E-133
blast CAA88049 Hypothetical protein F19C6.5 [Caenorhabditis elegans] ref|NP_509675.1| F19C6.5 [Caenorhabditis elegans] sp|Q09308|YQR5_CAEEL Hypothetical protein F19C6.5 in chromosome X 1.0E-119
blast CAE58756 Hypothetical protein CBG01948 [Caenorhabditis briggsae] 1.0E-118
blast CAE58756 Hypothetical protein CBG01948 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509675.1 5 53-75,102-124,139-161,182-204,208-230
F19C6.5 5 53-75,102-124,139-161,182-204,208-230
SNAP00000036247 4 44-66,86-108,170-189,193-215
GENEFINDER00000036257 5 53-75,102-124,139-161,182-204,208-230
Sequence
Target Sequence 
>C. ELEGANS:186597_AT
tggcagtggttattgcgcagctcaccattggagtgcttggtaacagtctgacacttgtag
cggatgcaacaagaatattcgctgatcacttggaactttttcagtacgatagagcagcaa
caccaggaaaaagactcacagaaatcataactgtcggaattactaatgttatactatttc
tgttattcgttgcatttttgctcaccgcttctggtagagctgccaccatggaattcgata
tcaatagattatacttgtcaattggtactgccatggcgatgactgccaacactctgcaga
ctttgtgtcattttagaacatggcaaagagaacgaagttatcattcatcgttgtacactg
gatcgaaaagaaatcaactgatgcatggatttgtatatcattttattgcatattttgttc
tagtttcttcattacttattattgtgaataaagattacctgatcgcagatgtaatcacaa
cttatgccaccagtcttcttatcctcgccaacatttcctcaataggatatcaactttacc
acgaatacttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCAGTGGTTATTGCGCAGCTCAC 683 545 179 Antisense
CGCAGCTCACCATTGGAGTGCTTGG 200 255 194 Antisense
ACAGTCTGACACTTGTAGCGGATGC 274 107 221 Antisense
TTTGCTCACCGCTTCTGGTAGAGCT 482 661 375 Antisense
GGTAGAGCTGCCACCATGGAATTCG 215 503 391 Antisense
TGGTACTGCCATGGCGATGACTGCC 82 553 441 Antisense
GATGACTGCCAACACTCTGCAGACT 409 411 456 Antisense
GTTATCATTCATCGTTGTACACTGG 118 447 515 Antisense
AATCACAACTTATGCCACCAGTCTT 694 169 651 Antisense
TCCTCGCCAACATTTCCTCAATAGG 34 593 680 Antisense
ATCAACTTTACCACGAATACTTCTC 38 25 707 Antisense
Sequence Source Affymetrix Proprietary Database