[Home] | [Total List]

[186596_at]

Description ZK675.4 /REP_DB=WormBase Gene ID /WP=CE01723 /TR=SW:Q09380 /GB=CAA86846.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 10.1
(-0.7)
A 		13.1
(0.5)
A 		4.3
(-3)
A 		19.4
(3)
A 		15
B 11.3
(-2.2)
A 		12.3
(-2)
A 		7.8
(-3)
A 		34.2
(3)
A 		26
C 9.5
(-2.8)
A 		12.9
(-2.5)
A 		6.4
(-3)
A 		84.5
(3)
A 		78
avr 10.3
(-2.4) 		12.8
(-2) 		6.2
(-3) 		46
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 179.6
(3)
A 		4.2
(-3)
A 		9.6
(-2.8)
A 		4.1
(-3)
A 		8.3
(-2.9)
A 		116.3
(0.8)
A 		176
B 140.3
(3)
A 		9.4
(-2.7)
A 		3.8
(-3)
A 		3.6
(-3)
A 		5.6
(-2.9)
A 		125.2
(2.3)
A 		137
C 123.9
(3)
A 		19.3
(-2.2)
A 		5.9
(-2.9)
A 		4.8
(-3)
A 		4.3
(-3)
A 		105.3
(2.1)
A 		120
avr 147.9
(3) 		11
(-2.7) 		6.4
(-2.9) 		4.2
(-3) 		6.1
(-2.9) 		115.6
(1.7) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.7
(3)
A 		2.8
(0.9)
A 		1.1
(-3)
A 		2.8
(0.9)
A 		3
B 3.6
(-1)
A 		3
(-1.7)
A 		1.8
(-3)
A 		7.3
(3)
A 		6
C 3.1
(-2.6)
A 		3.7
(-2.3)
A 		2.2
(-3)
A 		14.2
(3)
A 		12
avr 3.5
(-1.3) 		3.2
(-1.6) 		1.7
(-3) 		8.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 33.1
(3)
A 		1.5
(-2.9)
A 		2.1
(-2.8)
A 		1
(-3)
A 		2.5
(-2.7)
A 		28.3
(2.1)
A 		32
B 48.8
(3)
A 		3.1
(-2.7)
A 		0.9
(-3)
A 		1
(-3)
A 		2.3
(-2.8)
A 		46.7
(2.7)
A 		48
C 45.9
(3)
A 		5.9
(-2.3)
A 		1.5
(-2.9)
A 		1
(-3)
A 		1.4
(-2.9)
A 		35.2
(1.6)
A 		45
avr 42.6
(3) 		3.5
(-2.6) 		1.5
(-2.9) 		1
(-3) 		2.1
(-2.8) 		36.7
(2.1) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5304
Sequence Type Exemplar sequence
Representative Public ID ZK675.4 NCBI
Target Description ZK675.4 /REP_DB=WormBase Gene ID /WP=CE01723 /TR=SW:Q09380 /GB=CAA86846.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063264 NCBI Caenorhabditis elegans ZK675.4 (ZK675.4) mRNA, complete cds. 11/11 None
SNAP00000025892 ENSEMBL cdna:SNAP chromosome:CEL140:II:7911245:7911931:1 11/11 None
GENEFINDER00000025895 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7911245:7911931:1 11/11 None
ZK675.4 ENSEMBL cdna:known chromosome:CEL140:II:7911245:7912035:1 gene:ZK675.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7911241-7911928(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK675.4
Entrez Gene 174277 Entrez gene
SwissProt Q09380 EMBL-EBI
WormBase CE01723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86846 Hypothetical protein ZK675.4 [Caenorhabditis elegans] ref|NP_495665.1| ZK675.4 [Caenorhabditis elegans] sp|Q09380|YS64_CAEEL Hypothetical protein ZK675.4 in chromosome II 1.0E-101
blast CAE59820 Hypothetical protein CBG03287 [Caenorhabditis briggsae] 5.0E-91
Sequence
Target Sequence 
>C. ELEGANS:186596_AT
tgaagctgttctgcttgtttgctgctgccctcgtgctcttccacgtggacattacttcag
catgtggatcttcaactgattctgagtacattcaaaatcctgtattccaaatgcaaatta
gtcctccagttggttggacatacttcccatcgactccatctgtgacaagtcaagctatct
ggtactttgttggtcaatcaaatgacacaaccactgccaaaaaccgcgctgatgctgagc
taactgctgccatgctggaagcactgattgctgcaaatatgcaaacacaaggagtgacaa
ttgccaatgatttccagccaattcaaattgagaatccacagacgacaactccaactggaa
gtttatacggaaaggttgaaggtggagcacttgtatcaacagctccaggagtcacaactg
gagctattctgacctatacaccatatcatataactcttcgagtcactgtcaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCTGTTCTGCTTGTTTGCTGC 221 575 17 Antisense
GCAAATTAGTCCTCCAGTTGGTTGG 114 317 129 Antisense
TTGGTTGGACATACTTCCCATCGAC 98 707 146 Antisense
GCTATCTGGTACTTTGTTGGTCAAT 39 303 190 Antisense
GCCAAAAACCGCGCTGATGCTGAGC 149 277 232 Antisense
GATGCTGAGCTAACTGCTGCCATGC 651 413 247 Antisense
GACAATTGCCAATGATTTCCAGCCA 196 365 312 Antisense
ATCCACAGACGACAACTCCAACTGG 652 39 350 Antisense
GCACTTGTATCAACAGCTCCAGGAG 244 317 403 Antisense
TGGAGCTATTCTGACCTATACACCA 170 549 435 Antisense
TAACTCTTCGAGTCACTGTCAACAA 393 639 467 Antisense
Sequence Source Affymetrix Proprietary Database