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[186595_s_at]

Description Y32H12A.6 /REP_DB=WormBase Gene ID /WP=CE21510 /TR=Q9N535 /GB=AAF60484.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      6grp_total > 45      4grp_total > 15      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 57.6
(3)
P 		7.6
(-3)
A 		38.9
(0.8)
A 		30.9
(-0.2)
A 		50
B 74.1
(3)
P 		3.5
(-3)
A 		31.4
(-0.6)
A 		62
(2)
A 		71
C 90.6
(3)
P 		28.4
(-3)
A 		46.7
(-1.2)
P 		69.7
(1)
P 		62
avr 74.1
(3) 		13.2
(-3) 		39
(-0.5) 		54.2
(1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 78.6
(3)
A 		73.7
(2.4)
P 		65.1
(1.4)
P 		33.6
(-2.2)
A 		27
(-3)
P 		62.7
(1.2)
P 		52
B 86.9
(2.7)
P 		85.3
(2.4)
P 		88.7
(3)
P 		53.8
(-3)
P 		68.1
(-0.5)
P 		88.5
(3)
P 		35
C 69.9
(2.3)
P 		61.7
(0.3)
P 		66.9
(1.6)
P 		73
(3)
P 		47.7
(-3)
P 		61.4
(0.2)
P 		25
avr 78.5
(3) 		73.6
(2) 		73.6
(2) 		53.5
(-1.9) 		47.6
(-3) 		70.9
(1.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21
(3)
P 		1.7
(-3)
A 		10.2
(-0.4)
A 		4.5
(-2.1)
A 		19
B 23.6
(3)
P 		0.9
(-3)
A 		7.3
(-1.3)
A 		13.2
(0.3)
A 		23
C 30
(3)
P 		8.2
(-3)
A 		16.3
(-0.8)
P 		11.8
(-2)
P 		22
avr 24.9
(3) 		3.6
(-3) 		11.3
(-0.8) 		9.8
(-1.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 14.5
(-0.9)
A 		26.2
(3)
P 		14.2
(-1)
P 		8.5
(-2.9)
A 		8.2
(-3)
P 		15.3
(-0.6)
P 		18
B 30.2
(2.1)
P 		28.4
(1.5)
P 		21.5
(-0.7)
P 		14.2
(-3)
P 		27.7
(1.3)
P 		33
(3)
P 		19
C 25.9
(3)
P 		18.8
(-0.8)
P 		17
(-1.8)
P 		14.7
(-3)
P 		15.4
(-2.6)
P 		20.6
(0.2)
P 		11
avr 23.5
(2.5) 		24.5
(3) 		17.6
(-0.4) 		12.5
(-3) 		17.1
(-0.7) 		23
(2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186595_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8053
Sequence Type Exemplar sequence
Representative Public ID Y32H12A.6 NCBI
Target Description Y32H12A.6 /REP_DB=WormBase Gene ID /WP=CE21510 /TR=Q9N535 /GB=AAF60484.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065748 NCBI Caenorhabditis elegans Y32H12A.6 (Y32H12A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037247 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5380939:5381946:-1 11/11 None
SNAP00000037245 ENSEMBL cdna:SNAP chromosome:CEL140:III:5380996:5381946:-1 11/11 None
Y32H12A.6 ENSEMBL cdna:known chromosome:CEL140:III:5380927:5381957:-1 gene:Y32H12A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5380994-5381945(-) 99.29 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32H12A.6
Entrez Gene 175740 Entrez gene
SwissProt Q9N535 EMBL-EBI
WormBase CE21510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60484 Hypothetical protein Y32H12A.6 [Caenorhabditis elegans] ref|NP_498149.1| Y32H12A.6 [Caenorhabditis elegans] 1.0E-129
blast AAF60484 Hypothetical protein Y32H12A.6 [Caenorhabditis elegans] ref|NP_498149.1| Y32H12A.6 [Caenorhabditis elegans] 1.0E-128
blast CAE61330 Hypothetical protein CBG05168 [Caenorhabditis briggsae] 1.0E-103
blast CAE61330 Hypothetical protein CBG05168 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498149.1 1 34-53
Y32H12A.6 1 34-53
GENEFINDER00000037247 1 34-53
SNAP00000037245 1 34-53
Sequence
Target Sequence 
>C. ELEGANS:186595_S_AT
cagctccgtgggccaaggtgattcacgacaagctttgtgatgaaatggtccgaaaaccga
tgatttggtggtcagactctttggatgtgaaggagttaatggccttcaagggattttgta
tttttatctctgaaactacggctggtggtcagccgacaccctcgacagaatggtttttgg
aatggcttgaggatctcgcagcggactcgaagcttagaaagaaggcgaatttcgagaaaa
tcagattttcaattgttggcttcggaagcagtgatgatgggccagctgggttcaataaag
tcgccagaactttgctgaaacgaatgaaaatcttgggagctaggcaaattactgaagtcg
aacttttcaatacaactgacactgataagcaaactatggagcgatttgtggaattttcgt
tcgaactccttttgcaaatggataagcatcttcctggaatgagtggtgaagacaccgaag
aatcggaagttggagacgatagatctgagagctcttcggatgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTCCGTGGGCCAAGGTGATTCA 707 201 293 Antisense
GGTGGTCAGACTCTTTGGATGTGAA 498 499 359 Antisense
ATCTCTGAAACTACGGCTGGTGGTC 557 31 418 Antisense
GACACCCTCGACAGAATGGTTTTTG 561 367 447 Antisense
AATGGCTTGAGGATCTCGCAGCGGA 75 163 473 Antisense
ATCTCGCAGCGGACTCGAAGCTTAG 37 33 485 Antisense
GAAGCAGTGATGATGGGCCAGCTGG 257 341 557 Antisense
GGCCAGCTGGGTTCAATAAAGTCGC 371 541 572 Antisense
AAGTCGCCAGAACTTTGCTGAAACG 595 157 590 Antisense
TTTCGTTCGAACTCCTTTTGCAAAT 243 213 707 Antisense
GATCTGAGAGCTCTTCGGATGATAA 346 415 794 Antisense
Sequence Source Affymetrix Proprietary Database