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[186592_at]

Description F08D12.12 /REP_DB=WormBase Gene ID /WP=CE09245 /TR=P91239 /GB=AAB37935.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 57.6
(-1.5)
A 		56.9
(-1.8)
M 		71
(3)
A 		53.2
(-3)
A 		18
B 66.3
(3)
A 		36.6
(-2.6)
A 		34.2
(-3)
A 		52.8
(0.5)
A 		32
C 58.9
(2.7)
A 		45.2
(0.6)
A 		22.5
(-3)
P 		60.8
(3)
A 		38
avr 60.9
(3) 		46.2
(-1.8) 		42.6
(-3) 		55.6
(1.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 3.8
(-3)
A 		59.4
(3)
A 		54
(2.4)
A 		18.6
(-1.4)
A 		5.7
(-2.8)
A 		20.3
(-1.2)
A 		56
B 35.2
(3)
A 		20.8
(-3)
A 		31.1
(1.3)
A 		25
(-1.3)
A 		28.6
(0.3)
A 		20.8
(-3)
A 		14
C 31.5
(-0.5)
A 		65.6
(3)
P 		54.4
(1.9)
A 		49.6
(1.4)
A 		32.4
(-0.4)
A 		7
(-3)
A 		59
avr 23.5
(-1.6) 		48.6
(3) 		46.5
(2.6) 		31.1
(-0.2) 		22.2
(-1.9) 		16
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 21
(3)
A 		12.4
(-0.9)
M 		18.6
(1.9)
A 		7.8
(-3)
A 		13
B 21.2
(3)
A 		9
(-2.5)
A 		7.9
(-3)
A 		11.3
(-1.5)
A 		13
C 19.5
(3)
A 		13
(-0.3)
A 		7.8
(-3)
P 		10.2
(-1.8)
A 		12
avr 20.6
(3) 		11.5
(-2.1) 		11.4
(-2.1) 		9.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.7
(-3)
A 		21.1
(3)
A 		11.8
(0.3)
A 		4.7
(-1.8)
A 		1.7
(-2.7)
A 		4.9
(-1.8)
A 		20
B 12.2
(3)
A 		6.9
(-2.7)
A 		7.6
(-1.9)
A 		6.6
(-3)
A 		11.6
(2.4)
A 		7.7
(-1.8)
A 		6
C 11.7
(0.2)
A 		20
(3)
P 		13.9
(0.9)
A 		10
(-0.4)
A 		10.5
(-0.2)
A 		2.4
(-3)
A 		18
avr 8.2
(-1.3) 		16
(3) 		11.1
(0.3) 		7.1
(-1.9) 		7.9
(-1.4) 		5
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4418
Sequence Type Exemplar sequence
Representative Public ID F08D12.12 NCBI
Target Description F08D12.12 /REP_DB=WormBase Gene ID /WP=CE09245 /TR=P91239 /GB=AAB37935.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061964 NCBI Caenorhabditis elegans F08D12.12 (F08D12.12) mRNA, complete cds. 11/11 None
SNAP00000023721 ENSEMBL cdna:SNAP chromosome:CEL140:II:2783149:2786998:-1 11/11 None
GENEFINDER00000023737 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2783149:2784471:-1 11/11 None
F08D12.12.1 ENSEMBL cdna:known chromosome:CEL140:II:2783102:2787081:-1 gene:F08D12.12 11/11 None
F08D12.12.2 ENSEMBL cdna:known chromosome:CEL140:II:2783149:2787057:-1 gene:F08D12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2783147-2787258(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.12
Entrez Gene 184180 Entrez gene
SwissProt P91239 EMBL-EBI
WormBase CE37221 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3910 DNA ligase (ATP) activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37935 Hypothetical protein F08D12.12 [Caenorhabditis elegans] ref|NP_494365.3| F08D12.12 [Caenorhabditis elegans] 1.0E-171
blast CAE72425 Hypothetical protein CBG19591 [Caenorhabditis briggsae] 1.0E-108
blast AAB37935 Hypothetical protein F08D12.12 [Caenorhabditis elegans] ref|NP_494365.3| F08D12.12 [Caenorhabditis elegans] 1.0E-104
blast CAE72425 Hypothetical protein CBG19591 [Caenorhabditis briggsae] 3.0E-82
blast CAE72425 Hypothetical protein CBG19591 [Caenorhabditis briggsae] 3.0E-77
Sequence
Target Sequence 
>C. ELEGANS:186592_AT
tggctgggagcagtgcaaccgacgagagcggtcgttcgagcagtcaaatgagcaatgaga
gtaccacaccaaggagagatgacagtccggcttcatcgtgtgatatcaaggagcaagagg
tgacaatgaagctctccgccgtgtcaatgtcctcgaggaccagtgagccaaagctgaaga
aagtgacgttcgagagctcaccatatgttatatcgaactcttttttaggagatggagcgg
gcaaagtgctggtagtccgccgtggcagcggaacagcaatccgacgggtcggcccggttg
gggcgagtggatggaatcagccggccaggaaaggggacgaagtgtctggcgacgactggt
ggactccgtgtggaaaagacgacgaggaggaagcaatcaatgataatcagctaaacaagc
atctggagaagggcgctgagaagagatccattctccgccgtggcctaatccgtcggcgga
gcacctccgacaagactaggcttttggcttatcggaataccgggttcctgacatcttccc
aggagagaaagtcggaatctacgcctacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTGGGAGCAGTGCAACCGACGA 598 543 857 Antisense
GACGAGAGCGGTCGTTCGAGCAGTC 448 379 877 Antisense
GTCCGGCTTCATCGTGTGATATCAA 182 477 941 Antisense
TGTCCTCGAGGACCAGTGAGCCAAA 443 555 1004 Antisense
CGGGCAAAGTGCTGGTAGTCCGCCG 548 243 1094 Antisense
GGAACAGCAATCCGACGGGTCGGCC 103 529 1126 Antisense
GACGAAGTGTCTGGCGACGACTGGT 303 379 1192 Antisense
ACGACTGGTGGACTCCGTGTGGAAA 144 93 1208 Antisense
AGCACCTCCGACAAGACTAGGCTTT 269 75 1336 Antisense
GGCTTTTGGCTTATCGGAATACCGG 680 535 1355 Antisense
GAAAGTCGGAATCTACGCCTACATC 249 355 1403 Antisense
Sequence Source Affymetrix Proprietary Database