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[186591_at]

Description C41G7.7 /REP_DB=WormBase Gene ID /WP=CE08671 /TR=SW:Q93364 /GB=CAB02843.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 36      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 50.6
(3)
A 		34.8
(0.5)
A 		13
(-3)
A 		34.9
(0.5)
A 		38
B 33.8
(0.7)
A 		49.8
(3)
A 		25.4
(-0.6)
A 		8.9
(-3)
A 		41
C 14.4
(-3)
A 		32.5
(1)
A 		15.6
(-2.7)
A 		41.7
(3)
A 		27
avr 32.9
(1.3) 		39
(3) 		18
(-3) 		28.5
(0) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 38.2
(0.6)
A 		26.1
(-1)
A 		57.1
(3)
A 		19.6
(-1.8)
A 		13
(-2.7)
A 		10.6
(-3)
A 		47
B 17.7
(0.5)
A 		27.5
(3)
A 		12.2
(-0.9)
A 		10.2
(-1.4)
A 		3.9
(-3)
A 		16.9
(0.3)
A 		24
C 35.4
(3)
A 		6.9
(-3)
A 		34.3
(2.8)
A 		13.8
(-1.5)
A 		11.2
(-2.1)
A 		12.5
(-1.8)
A 		29
avr 30.4
(2) 		20.2
(-0.4) 		34.5
(3) 		14.5
(-1.8) 		9.4
(-3) 		13.3
(-2.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.4
(3)
A 		7.5
(-1.4)
A 		3.4
(-3)
A 		5.1
(-2.3)
A 		15
B 10.8
(2.1)
A 		12.3
(3)
A 		5.9
(-0.7)
A 		1.9
(-3)
A 		10
C 4.8
(-3)
A 		9.3
(3)
A 		5.4
(-2.2)
A 		7
(-0.1)
A 		5
avr 11.3
(3) 		9.7
(1.5) 		4.9
(-2.8) 		4.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7
(-0.3)
A 		9.3
(1.1)
A 		12.4
(3)
A 		5
(-1.5)
A 		3.9
(-2.2)
A 		2.6
(-3)
A 		10
B 6.2
(0.6)
A 		9.2
(3)
A 		3
(-1.9)
A 		2.7
(-2.1)
A 		1.6
(-3)
A 		6.3
(0.7)
A 		8
C 13.1
(3)
A 		2.1
(-3)
A 		8.7
(0.6)
A 		2.8
(-2.6)
A 		3.6
(-2.2)
A 		4.2
(-1.9)
A 		11
avr 8.8
(3) 		6.9
(1) 		8
(2.2) 		3.5
(-2.5) 		3
(-3) 		4.4
(-1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1018
Sequence Type Exemplar sequence
Representative Public ID C41G7.7 NCBI
Target Description C41G7.7 /REP_DB=WormBase Gene ID /WP=CE08671 /TR=SW:Q93364 /GB=CAB02843.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060131 NCBI Caenorhabditis elegans C41G7.7 (C41G7.7) mRNA, complete cds. 11/11 None
C41G7.7 ENSEMBL cdna:known chromosome:CEL140:I:9541703:9544394:-1 gene:C41G7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008728 8/11 Cross Hyb Matching Probes None
SNAP00000008723 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9541633-9543170(-) 92.36 92.36
Public Domain and Genome References
Gene Title
Ensembl C41G7.7
Entrez Gene 183392 Entrez gene
SwissProt Q93364 EMBL-EBI
WormBase CE08671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02843 Hypothetical protein C41G7.7 [Caenorhabditis elegans] ref|NP_492532.1| C41G7.7 [Caenorhabditis elegans] sp|Q93364|YE3O_CAEEL Hypothetical protein C41G7.7 in chromosome I 7.0E-89
Sequence
Target Sequence 
>C. ELEGANS:186591_AT
tgaaatcctttcaccattctttctttttcattatttgttcaaaaacatctcaaaaatgtc
aaacgttgaccgatatgatgttcaccgggatggtattgagaaagatcgaaaaaggtctcg
aagccgaaaacctcatcaaaatggtcaaagccagtcaactatggataaccgtcctccatg
gaataatgttcatatttcaattacctttcaagtattattattcacacattgtcaacagtc
ttcaaaagtgctcaaaatacctcaaaaagtcacaatttatacatacatcgaaggatatga
tgatgttgatgagcatggaaagttcagaaaacgaggaggtggaatgccaaagactattga
cagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATCCTTTCACCATTCTTTCTT 406 571 48 Antisense
GTTGACCGATATGATGTTCACCGGG 633 435 112 Antisense
GATGTTCACCGGGATGGTATTGAGA 709 409 124 Antisense
TCTCGAAGCCGAAAACCTCATCAAA 19 611 163 Antisense
AAATGGTCAAAGCCAGTCAACTATG 182 121 186 Antisense
GTCAACTATGGATAACCGTCCTCCA 433 463 201 Antisense
AACCGTCCTCCATGGAATAATGTTC 434 145 214 Antisense
AATGTTCATATTTCAATTACCTTTC 146 163 232 Antisense
TATTCACACATTGTCAACAGTCTTC 128 663 266 Antisense
GTCAACAGTCTTCAAAAGTGCTCAA 117 465 278 Antisense
GGAATGCCAAAGACTATTGACAGAC 204 533 388 Antisense
Sequence Source Affymetrix Proprietary Database