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[186590_at]

Description Y45F10B.12 /REP_DB=WormBase Gene ID /WP=CE18409 /TR=O62473 /GB=CAA16359.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(-3)
A 		2.9
(-0.3)
A 		3.5
(0.5)
A 		5.3
(3)
A 		4
B 0.6
(-3)
A 		3
(3)
A 		2.1
(0.8)
A 		1.8
(0)
A 		2
C 2
(0.6)
A 		3.1
(3)
A 		0.4
(-3)
A 		2.7
(2.1)
A 		3
avr 1.2
(-3) 		3
(2.1) 		2
(-0.7) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.9
(-2.3)
A 		0.5
(-3)
A 		13.3
(3)
A 		3.9
(-1.4)
A 		3.4
(-1.6)
A 		0.9
(-2.8)
A 		13
B 1.6
(-0.8)
A 		1.1
(-1.7)
A 		3.6
(3)
A 		1.2
(-1.5)
A 		0.4
(-3)
A 		1
(-1.9)
A 		3
C 1.1
(-1.4)
A 		1.9
(0.7)
A 		1.8
(0.4)
A 		2.8
(3)
A 		0.5
(-3)
A 		1.9
(0.7)
A 		2
avr 1.5
(-2.6) 		1.2
(-3) 		6.2
(3) 		2.6
(-1.3) 		1.4
(-2.8) 		1.3
(-2.9) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.3
(-3)
A 		0.6
(-0)
A 		0.9
(3)
A 		0.8
(2)
A 		1
B 0.2
(-3)
A 		0.7
(3)
A 		0.5
(0.6)
A 		0.4
(-0.6)
A 		1
C 0.7
(1.5)
A 		0.9
(3)
A 		0.1
(-3)
A 		0.5
(0)
A 		1
avr 0.4
(-3) 		0.7
(3) 		0.5
(-1) 		0.6
(1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.3
(-2.8)
A 		0.2
(-3)
A 		2.9
(3)
A 		1
(-1.2)
A 		1
(-1.2)
A 		0.2
(-3)
A 		3
B 0.6
(0.8)
A 		0.4
(-0.8)
A 		0.9
(3)
A 		0.3
(-1.5)
A 		0.1
(-3)
A 		0.4
(-0.8)
A 		1
C 0.4
(0.6)
A 		0.6
(3)
A 		0.5
(1.8)
A 		0.6
(3)
A 		0.1
(-3)
A 		0.6
(3)
A 		1
avr 0.4
(-3) 		0.4
(-3) 		1.4
(3) 		0.6
(-1.8) 		0.4
(-3) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9501
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.12 NCBI
Target Description Y45F10B.12 /REP_DB=WormBase Gene ID /WP=CE18409 /TR=O62473 /GB=CAA16359.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070218 NCBI Caenorhabditis elegans Y45F10B.12 (Y45F10B.12) mRNA, complete cds. 11/11 None
SNAP00000007857 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13585912:13588419:1 11/11 None
GENEFINDER00000007865 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13587444:13590306:1 10/11 None
Y45F10B.12 ENSEMBL cdna:known chromosome:CEL140:IV:13587444:13588206:1 gene:Y45F10B.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13587449-13588212(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10B.12
Entrez Gene 189921 Entrez gene
SwissProt O62473 EMBL-EBI
WormBase CE18409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16359 Hypothetical protein Y45F10B.12 [Caenorhabditis elegans] ref|NP_502619.1| Y45F10B.12 [Caenorhabditis elegans] 1.0E-131
blast CAA16359 Hypothetical protein Y45F10B.12 [Caenorhabditis elegans] ref|NP_502619.1| Y45F10B.12 [Caenorhabditis elegans] 1.0E-124
blast CAA16361 Hypothetical protein Y45F10B.11 [Caenorhabditis elegans] ref|NP_502620.2| Serpentine Receptor, class U family member (sru-9) [Caenorhabditis elegans] 1.0E-120
blast CAA16359 Hypothetical protein Y45F10B.12 [Caenorhabditis elegans] ref|NP_502619.1| Y45F10B.12 [Caenorhabditis elegans] 1.0E-117
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 2.0E-75
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 6.0E-31
blast CAA16358 Hypothetical protein Y45F10B.6 [Caenorhabditis elegans] ref|NP_502618.2| Serpentine Receptor, class U family member (sru-11) [Caenorhabditis elegans] 4.0E-30
blast AAB95008 Hypothetical protein T04B8.2 [Caenorhabditis elegans] ref|NP_493775.1| T04B8.2 [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007857 1 5-27
GENEFINDER00000007865 5 235-257,278-300,305-322,329-350,383-405
Sequence
Target Sequence 
>C. ELEGANS:186590_AT
ttgactgtttcggggaagtacgtgggcttcttcatgatccactatttttgaaatgcaccg
atttgcatatttatggaaatacagagcttttgaccaacgaggaaatgcaattcctactag
aaaagactggttcaataaagaaactcaaattgaattgtcttctgagtactgatttcaata
acaaaattctttttgatatttctgtgatggaatgtcacaaagaaggctttttcacgaaag
atgacctgaagaatatgaagtgtcaactcatttccgttcatcaaaacacgttgactgaaa
atcaaaccaacgagtttattcatcactggttgaaaggaggaaacccggacttaacaagat
taaaactttatcattttgatgacgattatattcctaattgggatgtactactgaagaccg
tcaaatattcaaaatttgatggaaaacgaagagcacgctatattaagcaagaattatcaa
actaccgttgtagaattgttaaatttgattgtgcgaacggattcgattttgagagaagtg
atggaaaacttgcaactgttatttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACTGTTTCGGGGAAGTACGTGG 166 599 56 Antisense
GAAGTACGTGGGCTTCTTCATGATC 314 337 70 Antisense
CTTCTTCATGATCCACTATTTTTGA 548 221 82 Antisense
GAATTGTCTTCTGAGTACTGATTTC 256 323 207 Antisense
GAAGGCTTTTTCACGAAAGATGACC 400 333 277 Antisense
GAAGTGTCAACTCATTTCCGTTCAT 499 335 312 Antisense
AACTCATTTCCGTTCATCAAAACAC 608 139 320 Antisense
CCAACGAGTTTATTCATCACTGGTT 469 275 362 Antisense
TCCTAATTGGGATGTACTACTGAAG 560 591 447 Antisense
AAATTTGATTGTGCGAACGGATTCG 14 109 556 Antisense
GGAAAACTTGCAACTGTTATTTATC 187 529 598 Antisense
Sequence Source Affymetrix Proprietary Database