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[186587_s_at]

Description Y54E10A.6 /REP_DB=WormBase Gene ID /WP=CE24450 /TR=Q9N3F2 /GB=AAF60763.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 160.6
(3)
A 		116.6
(-3)
A 		154.4
(2.2)
A 		157.5
(2.6)
M 		44
B 128.4
(0.8)
A 		132.3
(1.5)
A 		108.8
(-3)
A 		140
(3)
A 		31
C 96.9
(-3)
A 		135.5
(1.1)
A 		138.8
(1.5)
A 		153.3
(3)
A 		56
avr 128.6
(-2.9) 		128.1
(-3) 		134
(-1.4) 		150.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 18.6
(-2.3)
A 		31.3
(-1.6)
A 		116.9
(3)
A 		12.1
(-2.7)
A 		6.4
(-3)
A 		60.4
(-0.1)
A 		111
B 33.4
(-2.8)
A 		30.5
(-3)
A 		76.4
(-0.5)
A 		35.8
(-2.7)
A 		54.3
(-1.7)
A 		139.4
(3)
P 		109
C 10.7
(-2.7)
A 		13.5
(-2.5)
A 		13
(-2.6)
A 		10.8
(-2.7)
A 		6.8
(-3)
A 		90.4
(3)
A 		84
avr 20.9
(-2.9) 		25.1
(-2.6) 		68.8
(0.8) 		19.6
(-3) 		22.5
(-2.8) 		96.7
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 58.5
(3)
A 		25.3
(-2.6)
A 		40.4
(-0.1)
A 		23.1
(-3)
M 		35
B 41
(3)
A 		32.7
(-0.2)
A 		25.2
(-3)
A 		29.8
(-1.3)
A 		16
C 32.1
(-1.3)
A 		39
(0.5)
A 		48.4
(3)
A 		25.8
(-3)
A 		23
avr 43.9
(3) 		32.3
(-0.9) 		38
(1) 		26.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 3.4
(-2.6)
A 		11.1
(-0.7)
A 		25.5
(3)
A 		3.1
(-2.7)
A 		1.9
(-3)
A 		14.7
(0.3)
A 		24
B 11.6
(-2.7)
A 		10.1
(-2.9)
A 		18.5
(-1.7)
A 		9.5
(-3)
A 		22
(-1.2)
A 		52
(3)
P 		43
C 4
(-2.6)
A 		4.1
(-2.6)
A 		3.3
(-2.8)
A 		2.2
(-3)
A 		2.2
(-3)
A 		30.3
(3)
A 		28
avr 6.3
(-2.7) 		8.4
(-2.2) 		15.8
(-0.6) 		4.9
(-3) 		8.7
(-2.2) 		32.3
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186587_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.186
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.6 NCBI
Target Description Y54E10A.6 /REP_DB=WormBase Gene ID /WP=CE24450 /TR=Q9N3F2 /GB=AAF60763.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058714 NCBI Caenorhabditis elegans Y54E10A.6 (Y54E10A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000033840 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3163693:3171124:1 9/11 None
Y54E10A.6 ENSEMBL cdna:known chromosome:CEL140:I:3163689:3168023:1 gene:Y54E10A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033827 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3163692-3167434(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.6
Entrez Gene 171890 Entrez gene
SwissProt Q9N3F2 EMBL-EBI
WormBase CE24450 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588344_AT similar to Y54E10A.6 cfa
CANINE_2:CFA.14991.1.A1_AT similar to Y54E10A.6 cfa
CHICKEN:GGA.9073.1.S1_AT similar to KIAA1185 protein gga
HU35KSUBD:RC_AA446594_AT leucine rich repeat containing 47 hs
U133_X3P:HS.268488.0.S1_3P_AT leucine rich repeat containing 47 hs
HG-U133A_2:212904_AT leucine rich repeat containing 47 hs
HG-U133_PLUS_2:212904_AT leucine rich repeat containing 47 hs
HG-U133A:212904_AT leucine rich repeat containing 47 hs
HU35KSUBD:RC_H54278_AT Leucine rich repeat containing 47 hs
MG-U74BV2:110267_G_AT leucine rich repeat containing 47 mm
MG-U74BV2:110268_AT leucine rich repeat containing 47 mm
MOE430B:1428451_AT leucine rich repeat containing 47 mm
MOUSE430_2:1428451_AT leucine rich repeat containing 47 mm
MU19KSUBA:TC15214_AT Leucine rich repeat containing 47, mRNA (cDNA clone MGC:106431 IMAGE:30354494) mm
RAE230A:1374186_AT Similar to KIAA1185 protein (predicted) rn
RAT230_2:1374186_AT Similar to KIAA1185 protein (predicted) rn
RG-U34C:RC_AA859462_AT Similar to KIAA1185 protein (predicted) rn
RG-U34C:RC_AI104254_AT Similar to KIAA1185 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60763 Hypothetical protein Y54E10A.6 [Caenorhabditis elegans] ref|NP_491115.1| Y54E10A.6 [Caenorhabditis elegans] 0.0
blast CAE60545 Hypothetical protein CBG04172 [Caenorhabditis briggsae] 0.0
blast AAF60762 Hypothetical protein Y54E10A.5 [Caenorhabditis elegans] ref|NP_491116.2| Y54E10A.5 [Caenorhabditis elegans] 1.0E-88
blast XP_689022 PREDICTED: similar to leucine-rich repeat containing protein (56.4 kD) (1D735) [Danio rerio] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.17
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0035
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.026
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 2.7E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.085
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.086
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 10.0
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.16
Sequence
Target Sequence 
>C. ELEGANS:186587_S_AT
aaacgaaaatgcacgcgtcggctctctgtgagaatcgaactctttcggctattggaacgc
atcggctcgattcttttcagcttccactttgttatatggctcttccgaaggatgaactat
atatccgtgcattaaacaaaaaatcgagtgtaagtgcatctgaactgctggacagtcttc
ttcgtgacgctgagctggccagaaaacggagcaagagaagtacagttgatccattgcaca
agtacttgcatatagtaaaggatgagaatattcttgcgtgtcttgtagactctcaacaaa
ttgttattagcctgccaccgataaccaactcggattgcacaaagctaactgtggatacca
cgagcatctgggtagaagtatcttcgaaacaatcactggaagcatgtaaaaagacaatgg
atgaactgattctctcaagtcgtcagatattcccaactctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGAAAATGCACGCGTCGGCTCT 339 127 980 Antisense
GCGTCGGCTCTCTGTGAGAATCGAA 492 289 994 Antisense
GAACTCTTTCGGCTATTGGAACGCA 179 349 1016 Antisense
TTGGAACGCATCGGCTCGATTCTTT 252 709 1031 Antisense
TCTTTTCAGCTTCCACTTTGTTATA 51 617 1051 Antisense
AACTGCTGGACAGTCTTCTTCGTGA 630 141 1142 Antisense
TTCGTGACGCTGAGCTGGCCAGAAA 344 695 1160 Antisense
CTTGCGTGTCTTGTAGACTCTCAAC 303 219 1252 Antisense
AAATTGTTATTAGCCTGCCACCGAT 303 115 1277 Antisense
GATGAACTGATTCTCTCAAGTCGTC 138 413 1399 Antisense
TCGTCAGATATTCCCAACTCTTTCA 659 603 1419 Antisense
Sequence Source Affymetrix Proprietary Database