[Home] | [Total List]

[186586_at]

Description ZK632.7 /REP_DB=WormBase Gene ID /WP=CE00424 /TR=SW:P34653 /GB=CAA80184.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 144.5
(3)
M 		116.8
(0.6)
A 		125.2
(1.4)
A 		74.2
(-3)
A 		70
B 168.9
(0.6)
M 		114.9
(-3)
A 		154
(-0.4)
A 		204.5
(3)
A 		90
C 167.1
(3)
P 		118.9
(-0.8)
P 		90.5
(-3)
M 		106.3
(-1.8)
A 		77
avr 160.2
(3) 		116.9
(-3) 		123.2
(-2.1) 		128.3
(-1.4) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 84.3
(-2.7)
A 		203
(3)
P 		105.5
(-1.6)
A 		98.2
(-2)
A 		77.1
(-3)
A 		119.6
(-1)
P 		126
B 130.1
(1.3)
A 		145.9
(2.6)
A 		125.1
(0.9)
P 		114.9
(0.1)
A 		77.7
(-3)
A 		150.8
(3)
P 		73
C 300.8
(3)
P 		147.7
(-1.6)
A 		103
(-3)
A 		123.4
(-2.4)
A 		108.6
(-2.8)
P 		145.3
(-1.7)
P 		198
avr 171.7
(3) 		165.5
(2.6) 		111.2
(-1.3) 		112.2
(-1.3) 		87.8
(-3) 		138.6
(0.6) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 52.6
(3)
M 		25.4
(-0.9)
A 		32.7
(0.1)
A 		10.9
(-3)
A 		42
B 53.9
(3)
M 		28.4
(-3)
A 		35.7
(-1.3)
A 		43.6
(0.6)
A 		26
C 55.3
(3)
P 		34.2
(-0.4)
P 		31.5
(-0.8)
M 		17.9
(-3)
A 		37
avr 53.9
(3) 		29.3
(-2) 		33.3
(-1.1) 		24.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 15.5
(-3)
A 		72.2
(3)
P 		23
(-2.2)
A 		24.9
(-2)
A 		23.3
(-2.2)
A 		29.1
(-1.6)
P 		57
B 45.3
(0.5)
A 		48.6
(1.2)
A 		30.4
(-3)
P 		30.4
(-3)
A 		31.5
(-2.7)
A 		56.2
(3)
P 		26
C 111.5
(3)
P 		45.1
(-1.6)
A 		26.2
(-2.9)
A 		24.8
(-3)
A 		35.2
(-2.3)
P 		48.6
(-1.4)
P 		87
avr 57.4
(3) 		55.3
(2.6) 		26.5
(-3) 		26.7
(-3) 		30
(-2.3) 		44.6
(0.5) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6200
Sequence Type Exemplar sequence
Representative Public ID ZK632.7 NCBI
Target Description ZK632.7 /REP_DB=WormBase Gene ID /WP=CE00424 /TR=SW:P34653 /GB=CAA80184.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066776 NCBI Caenorhabditis elegans ZK632.7 (ZK632.7) mRNA, complete cds. 11/11 None
SNAP00000031477 ENSEMBL cdna:SNAP chromosome:CEL140:III:9819197:9822030:1 11/11 None
GENEFINDER00000031484 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9819197:9822328:1 11/11 None
ZK632.7.2 ENSEMBL cdna:known chromosome:CEL140:III:9819186:9823014:1 gene:ZK632.7 11/11 None
ZK632.7.1 ENSEMBL cdna:known chromosome:CEL140:III:9819188:9823014:1 gene:ZK632.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9818455-9822235(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.7
Entrez Gene 176391 Entrez gene
SwissProt P34653 EMBL-EBI
WormBase CE37601 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11016.1.S1_AT similar to PABP1-dependent poly A-specific ribonuclease subunit PAN3 cfa
DROSOPHILA_2:1626332_S_AT dm
DROSGENOME1:153822_AT dm
CHICKEN:GGA.16885.1.S1_S_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
CHICKEN:GGA.18898.1.S1_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
CHICKEN:GGA.9959.1.S1_S_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
CHICKEN:GGAAFFX.25166.1.S1_S_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 gga
HU35KSUBA:RC_AA452590_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
U133_X3P:HS.30348.0.S1_3P_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:225563_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:225563_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:44657_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:87554_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:239393_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:239393_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:239597_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:239597_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:239745_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:239745_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133_PLUS_2:243233_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U133B:243233_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:47237_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:47723_I_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:47724_R_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95B:54365_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95C:61800_F_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95C:61801_R_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95E:81269_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:81563_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:81810_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95E:81837_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95E:84873_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HG-U95D:85892_I_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HU35KSUBB:RC_H57725_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HU35KSUBB:RC_R89847_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
HU35KSUBC:RC_N50817_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
U133_X3P:HS.125243.0.A1_3P_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
U133_X3P:HS.159983.0.A1_3P_AT PABP1-dependent poly A-specific ribonuclease subunit PAN3 hs
MG-U74BV2:111283_AT RIKEN cDNA 2700050F09 gene mm
MOE430B:1428768_AT RIKEN cDNA 2700050F09 gene mm
MOUSE430_2:1428768_AT RIKEN cDNA 2700050F09 gene mm
MOE430B:1447895_X_AT RIKEN cDNA 2700050F09 gene mm
MOUSE430_2:1447895_X_AT RIKEN cDNA 2700050F09 gene mm
MG-U74BV2:104988_AT RIKEN cDNA 2700050F09 gene (2700050F09Rik), mRNA mm
MG-U74BV2:115512_AT RIKEN cDNA 2700050F09 gene (2700050F09Rik), mRNA mm
RG-U34B:RC_AA964361_AT similar to OTTHUMP00000042400 rn
RG-U34B:RC_AI012264_AT similar to OTTHUMP00000042400 rn
RAE230A:1373898_AT similar to OTTHUMP00000042400 rn
RAT230_2:1373898_AT similar to OTTHUMP00000042400 rn
RAE230A:1375124_AT similar to OTTHUMP00000042400 rn
RAT230_2:1375124_AT similar to OTTHUMP00000042400 rn
RG-U34B:RC_AA850623_AT Similar to OTTHUMP00000042400 rn
RG-U34C:RC_AI176973_AT Similar to OTTHUMP00000042400 rn
YEAST_2:1774594_AT Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes Sc
Protein Similarities
Method ID Description E-Value
blast CAA80184 Hypothetical protein ZK632.7 [Caenorhabditis elegans] ref|NP_499177.3| ZK632.7 [Caenorhabditis elegans] sp|P34653|YOT7_CAEEL Hypothetical protein ZK632.7 in chromosome III 0.0
blast CAE65121 Hypothetical protein CBG09986 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186586_AT
aattgtggcattggcaactgggcgcgcaaatggatggaggaaggatctttatcaacaatt
gaaaaagtttattgaggatacttattcaatggatttgcgaaacgttattggttttctaca
caacaatagtactcgaaagacaataaatgaaataatgccaatgattggaggccgtttttt
cactgttatggaaaatatgcaggcaaaaacggatgttctggaagcagaattgagcagaga
aatggaaaatggacggctcttccggcttgttgcaaaaatgaatactgttcttgaaagagt
agaacacggaacagatgatgcatggtcagagactggagatcgctttatgctgaaattgtt
cagagattacgtattccatcaagttacggaccaaggaaaagcttggttagatatggcaca
tattgtacagtgcctcaataaattggattgtggatcgcaggaaaaaatcgaaatggtttc
acgaagcggggatacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTGGCATTGGCAACTGGGCGC 474 179 1422 Antisense
GCAACTGGGCGCGCAAATGGATGGA 444 315 1435 Antisense
TGATTGGAGGCCGTTTTTTCACTGT 434 563 1583 Antisense
TGGAAAATGGACGGCTCTTCCGGCT 656 545 1664 Antisense
GCTCTTCCGGCTTGTTGCAAAAATG 262 301 1677 Antisense
GAACACGGAACAGATGATGCATGGT 48 353 1723 Antisense
AGAGACTGGAGATCGCTTTATGCTG 95 69 1749 Antisense
ATTGTTCAGAGATTACGTATTCCAT 184 5 1776 Antisense
GTATTCCATCAAGTTACGGACCAAG 25 453 1792 Antisense
GCACATATTGTACAGTGCCTCAATA 628 315 1837 Antisense
ATGGTTTCACGAAGCGGGGATACGC 385 51 1894 Antisense
Sequence Source Affymetrix Proprietary Database