[Home] | [Total List]

[186585_at]

Description T28A11.13 /REP_DB=WormBase Gene ID /WP=CE14303 /TR=P91508 /GB=AAC48123.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.1
(-3)
A 		6.5
(-2)
A 		8.4
(-0.7)
A 		13.8
(3)
A 		9
B 7.4
(-1.9)
A 		3
(-3)
A 		26.7
(3)
A 		12.6
(-0.6)
A 		24
C 3.9
(-2.5)
A 		15.1
(1.2)
A 		2.4
(-3)
A 		20.6
(3)
A 		18
avr 5.5
(-3) 		8.2
(-1.4) 		12.5
(1.1) 		15.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.3
(-3)
A 		4.1
(-2.3)
A 		18.6
(3)
A 		6.6
(-1.4)
A 		13.2
(1)
A 		3.4
(-2.6)
A 		16
B 5.3
(1)
A 		5.7
(2.1)
A 		6
(3)
A 		4.1
(-2.4)
A 		4.5
(-1.3)
A 		3.9
(-3)
A 		2
C 5.8
(-0.3)
A 		7.6
(1.3)
A 		5.3
(-0.7)
A 		9.6
(3)
A 		3.5
(-2.3)
A 		2.7
(-3)
A 		7
avr 4.5
(-1.9) 		5.8
(-0.8) 		10
(3) 		6.8
(0.1) 		7.1
(0.4) 		3.3
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.8
(0)
A 		1.4
(-3)
A 		2.2
(3)
A 		2
(1.5)
A 		1
B 2.4
(-1.1)
A 		0.7
(-3)
A 		6.2
(3)
A 		2.7
(-0.8)
A 		6
C 1.3
(-2.1)
A 		4.3
(3)
A 		0.8
(-3)
A 		3.5
(1.6)
A 		4
avr 1.8
(-3) 		2.1
(-1.6) 		3.1
(3) 		2.7
(1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.5
(-1.2)
A 		4.1
(3)
A 		1.7
(-0.9)
A 		4
(2.8)
A 		0.8
(-2.4)
A 		4
B 1.8
(2.3)
A 		1.9
(3)
A 		1.5
(0)
A 		1.1
(-3)
A 		1.8
(2.3)
A 		1.5
(0)
A 		1
C 2.2
(2.6)
A 		2.3
(3)
A 		1.3
(-1.3)
A 		1.9
(1.3)
A 		1.1
(-2.1)
A 		0.9
(-3)
A 		1
avr 1.5
(-1) 		1.9
(1) 		2.3
(3) 		1.6
(-0.5) 		2.3
(3) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15098
Sequence Type Exemplar sequence
Representative Public ID T28A11.13 NCBI
Target Description T28A11.13 /REP_DB=WormBase Gene ID /WP=CE14303 /TR=P91508 /GB=AAC48123.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071491 NCBI Caenorhabditis elegans T28A11.13 (T28A11.13) mRNA, complete cds. 11/11 None
SNAP00000028203 ENSEMBL cdna:SNAP chromosome:CEL140:V:3249570:3250032:-1 11/11 None
GENEFINDER00000028239 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3249570:3250032:-1 11/11 None
T28A11.13 ENSEMBL cdna:known chromosome:CEL140:V:3249570:3250032:-1 gene:T28A11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3249569-3250032(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28A11.13
Entrez Gene 189019 Entrez gene
SwissProt P91508 EMBL-EBI
WormBase CE14303 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503892 T28A11.13 [Caenorhabditis elegans] gb|AAC48123.1| Hypothetical protein T28A11.13 [Caenorhabditis elegans] 6.0E-71
blast AAB37590 Hypothetical protein T20D4.7 [Caenorhabditis elegans] ref|NP_503954.1| T20D4.7 [Caenorhabditis elegans] 4.0E-48
blast AAM15583 Hypothetical protein K02H11.6 [Caenorhabditis elegans] ref|NP_503440.2| K02H11.6 [Caenorhabditis elegans] 4.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.97
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.0066
Sequence
Target Sequence 
>C. ELEGANS:186585_AT
gctcgattggacgttggtcgacgcaactgaagctctcgcaggaaaaatcggaggattcta
cttctcagctcattggtgtccaccatgctgcatgttcacaccgattctcaagaagttcta
cgagaaagtttatgatgatttcgagatcgtctttgtctcatccgatcctagcgagagtgg
cctgaaaaagtatatgcaagaatgccacggtgattggtattatattccttttgggcatga
ggccaagcaaaagctttgcgtcaagtatgaaattaccggaatgccaactctcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGATTGGACGTTGGTCGACGCA 61 299 15 Antisense
TGAAGCTCTCGCAGGAAAAATCGGA 672 573 42 Antisense
AAAAATCGGAGGATTCTACTTCTCA 480 127 57 Antisense
GGTGTCCACCATGCTGCATGTTCAC 704 499 89 Antisense
GTTCACACCGATTCTCAAGAAGTTC 280 445 108 Antisense
TCGAGATCGTCTTTGTCTCATCCGA 387 603 155 Antisense
CATCCGATCCTAGCGAGAGTGGCCT 2 211 173 Antisense
GCAAGAATGCCACGGTGATTGGTAT 240 319 210 Antisense
GATTGGTATTATATTCCTTTTGGGC 229 435 226 Antisense
TTCCTTTTGGGCATGAGGCCAAGCA 41 687 239 Antisense
AATTACCGGAATGCCAACTCTCGTT 47 175 285 Antisense
Sequence Source Affymetrix Proprietary Database