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[186584_s_at]

Description Y76B12C.7 /REP_DB=WormBase Gene ID /WP=CE25609 /TR=Q9N4C2 /GB=AAF36067.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 18      4grp_high_8_8 > 58      6grp_total > 37      4grp_total > 63      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 146.4
(3)
P 		49.3
(-2.4)
A 		73.6
(-1.1)
A 		39.1
(-3)
A 		107
B 79
(-0)
P 		100.2
(3)
P 		72.3
(-1)
A 		58.2
(-3)
P 		42
C 155
(3)
P 		28.9
(-3)
A 		128.7
(1.7)
P 		64.2
(-1.3)
P 		126
avr 126.8
(3) 		59.5
(-2.5) 		91.5
(0.1) 		53.8
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 68.7
(-0.3)
A 		118
(3)
P 		79.7
(0.4)
M 		107
(2.3)
P 		28.9
(-3)
A 		72.3
(-0.1)
P 		89
B 115.3
(2.7)
P 		110.8
(2.3)
P 		59
(-3)
A 		102.6
(1.4)
P 		75.2
(-1.4)
P 		118
(3)
P 		59
C 216.3
(3)
P 		102.5
(-0.8)
P 		81.9
(-1.5)
P 		35.9
(-3)
A 		116.4
(-0.3)
P 		124.8
(-0)
P 		180
avr 133.4
(3) 		110.4
(0.7) 		73.5
(-3) 		81.8
(-2.2) 		73.5
(-3) 		105
(0.2) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 53.3
(3)
P 		10.7
(-2.4)
A 		19.2
(-1.3)
A 		5.7
(-3)
A 		48
B 25.2
(3)
P 		24.8
(2.8)
P 		16.7
(-1)
A 		12.4
(-3)
P 		13
C 51.3
(3)
P 		8.3
(-3)
A 		44.9
(2.1)
P 		10.8
(-2.7)
P 		43
avr 43.3
(3) 		14.6
(-2.1) 		26.9
(0.1) 		9.6
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 12.7
(-2.3)
A 		42
(3)
P 		17.4
(-1.4)
M 		27.1
(0.3)
P 		8.7
(-3)
A 		17.6
(-1.4)
P 		33
B 40.1
(2.2)
P 		36.9
(1.6)
P 		14.3
(-3)
A 		27.2
(-0.4)
P 		30.5
(0.3)
P 		44
(3)
P 		30
C 80.2
(3)
P 		31.3
(-1)
P 		20.8
(-1.9)
P 		7.2
(-3)
A 		37.7
(-0.5)
P 		41.8
(-0.2)
P 		73
avr 44.3
(3) 		36.7
(1.3) 		17.5
(-3) 		20.5
(-2.3) 		25.6
(-1.2) 		34.5
(0.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186584_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11117
Sequence Type Exemplar sequence
Representative Public ID Y76B12C.7 NCBI
Target Description Y76B12C.7 /REP_DB=WormBase Gene ID /WP=CE25609 /TR=Q9N4C2 /GB=AAF36067.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067756
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000007763 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2009153:2011593:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067756 7/11 Cross Hyb Matching Probes A 
SNAP00000007754 7/11 Cross Hyb Matching Probes None
Y76B12C.7 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2009158-2032997(-) 95.71 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36067 Hypothetical protein Y76B12C.7 [Caenorhabditis elegans] ref|NP_500157.2| Y76B12C.7 [Caenorhabditis elegans] sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor, 160 kDa subunit (CPSF 160 kDa subunit) 7.0E-62
blast CAE70288 Hypothetical protein CBG16808 [Caenorhabditis briggsae] 5.0E-54
blast XP_624382 PREDICTED: similar to ENSANGP00000018461 [Apis mellifera] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:186584_S_AT
taggaaaattttcatcaacgcggaaaatcgaaaatttccgattttttggtattttcagat
taaaatcgaaaaatcggaattttttttcaaattaaaaaaaaaatcccgatttttaggtat
ttttcaggtcagttttcaactgaaaaatgacatttttagccgaaaatcgttccattttcc
aggtcacacatcgctgctccaattaaataatgaagatgaaaaagaggcaattgaacaacg
aatgacaacagtatttgcatcattagatggttcatttggatttgttcgtccattaactga
aaaatcatatcgtcgacttcatttccttcaaacattcatcggaagtgtgacaccacaaat
cgctggacttcatatcaagggatcacgatctgcgaaaccatctcaaccgattgttaacgg
acgaaatgctaggaatcttatcgatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGAAAATTTTCATCAACGCGGAA 37 653 4242 Antisense
GATTTTTAGGTATTTTTCAGGTCAG 379 427 4349 Antisense
GTATTTTTCAGGTCAGTTTTCAACT 114 453 4358 Antisense
CATTTTTAGCCGAAAATCGTTCCAT 219 215 4392 Antisense
TCACACATCGCTGCTCCAATTAAAT 21 629 4425 Antisense
GACAACAGTATTTGCATCATTAGAT 2 367 4485 Antisense
GATGGTTCATTTGGATTTGTTCGTC 253 407 4507 Antisense
GGATTTGTTCGTCCATTAACTGAAA 658 509 4519 Antisense
AAATCATATCGTCGACTTCATTTCC 647 117 4543 Antisense
GACTTCATTTCCTTCAAACATTCAT 515 371 4556 Antisense
GAAATGCTAGGAATCTTATCGATGG 709 359 4664 Antisense
Sequence Source Affymetrix Proprietary Database