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[186583_at]

Description F43C11.11 /REP_DB=WormBase Gene ID /WP=CE23718 /TR=Q9U5B2 /GB=AAF16621.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.3
(-2.3)
A 		2.6
(-3)
A 		8.5
(3)
A 		3.4
(-2.2)
A 		6
B 7
(0.9)
A 		4.3
(-3)
A 		8.5
(3)
A 		7.6
(1.7)
A 		4
C 3.2
(-2.9)
A 		3.1
(-3)
A 		5.7
(-1.5)
A 		13.5
(3)
A 		10
avr 4.5
(-1.5) 		3.3
(-3) 		7.6
(2.3) 		8.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.7
(3)
A 		6.2
(1.3)
A 		7.1
(2.3)
A 		2.9
(-2.5)
A 		2.5
(-3)
A 		4.1
(-1.2)
A 		5
B 7.2
(3)
A 		3.6
(-0.9)
A 		3.9
(-0.6)
A 		2.4
(-2.2)
A 		3.3
(-1.3)
A 		1.7
(-3)
A 		6
C 2.8
(-2)
A 		6.7
(0.5)
A 		3.5
(-1.6)
A 		10.6
(3)
A 		2
(-2.5)
A 		1.3
(-3)
A 		9
avr 5.9
(3) 		5.5
(2.3) 		4.8
(1.1) 		5.3
(2) 		2.6
(-2.7) 		2.4
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(-0.5)
A 		0.6
(-2.6)
A 		2.2
(3)
A 		0.5
(-3)
A 		2
B 2.2
(3)
A 		1.1
(-3)
A 		2
(1.9)
A 		1.6
(-0.3)
A 		1
C 1.1
(-2.1)
A 		0.9
(-3)
A 		2
(1.7)
A 		2.3
(3)
A 		1
avr 1.5
(-0) 		0.9
(-3) 		2.1
(3) 		1.5
(-0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.4
(-0.2)
A 		2.2
(3)
A 		1.6
(0.6)
A 		0.7
(-3)
A 		0.8
(-2.6)
A 		1
(-1.8)
A 		2
B 2.5
(3)
A 		1.2
(-1.1)
A 		0.9
(-2.1)
A 		0.6
(-3)
A 		1.3
(-0.8)
A 		0.6
(-3)
A 		2
C 1
(-0.9)
A 		2
(2.6)
A 		0.9
(-1.2)
A 		2.1
(3)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		2
avr 1.6
(1.9) 		1.8
(3) 		1.1
(-0.8) 		1.1
(-0.8) 		0.9
(-1.9) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5785
Sequence Type Exemplar sequence
Representative Public ID F43C11.11 NCBI
Target Description F43C11.11 /REP_DB=WormBase Gene ID /WP=CE23718 /TR=Q9U5B2 /GB=AAF16621.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061853 NCBI Caenorhabditis elegans F43C11.11 (F43C11.11) mRNA, complete cds. 11/11 None
SNAP00000013001 ENSEMBL cdna:SNAP chromosome:CEL140:II:2358802:2359762:-1 10/11 None
GENEFINDER00000013018 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2358714:2361456:-1 10/11 None
F43C11.11 ENSEMBL cdna:known chromosome:CEL140:II:2358802:2361438:-1 gene:F43C11.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013002 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2358800-2361437(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.11
Entrez Gene 185702 Entrez gene
SwissProt Q9U5B2 EMBL-EBI
WormBase CE23718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 0.0
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 1.0E-168
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 1.0E-93
blast AAC26272 Hypothetical protein F16G10.4 [Caenorhabditis elegans] ref|NP_494257.1| F16G10.4 [Caenorhabditis elegans] 4.0E-36
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 7.0E-35
blast AAC26272 Hypothetical protein F16G10.4 [Caenorhabditis elegans] ref|NP_494257.1| F16G10.4 [Caenorhabditis elegans] 7.0E-34
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 6.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 5.4E-60
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 6.7E-51
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 7.2E-50
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 8.7E-55
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 5.4E-60
Sequence
Target Sequence 
>C. ELEGANS:186583_AT
taccacgggagcaactcacggtgcagatggttcatttgacgggaagaagactaaagtggg
aattatgggatgtctgatggttataacagaaggctgcatgaaaacaattccaccagatga
ggtgtatatttcaagcacattaccctacgaggagactgatgttccagaggaaatgatgac
gacacttgcgatggagacttctaccgagacagaaaaagtttgcaaagggtccatgtgtcc
agattggaccccgtacctcgaagacacagtggagattattgaacaagatggttgctctgt
tccatcatgccctgcaaataaactacctcgcatactagctttctacgaagatagtgagat
cctacctctagatccatcactggaagtatttctaattaatcctccggcgtcattggcaca
gtatggtggtgccagtgtgatggaccactttggaatcatttgtgaagacaaaacgtggaa
gatcacaaagtatccgaatggaattatcgatgttatcacaaaggaaactcacggagcgga
tggttcattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCACGGGAGCAACTCACGGTGCA 79 649 336 Antisense
ATTTCAAGCACATTACCCTACGAGG 522 15 463 Antisense
GACGACACTTGCGATGGAGACTTCT 309 379 513 Antisense
GCAAAGGGTCCATGTGTCCAGATTG 304 317 557 Antisense
CCCCGTACCTCGAAGACACAGTGGA 621 261 584 Antisense
GATGGTTGCTCTGTTCCATCATGCC 682 407 622 Antisense
CATGCCCTGCAAATAAACTACCTCG 400 211 641 Antisense
AAACTACCTCGCATACTAGCTTTCT 263 127 655 Antisense
TCCTACCTCTAGATCCATCACTGGA 44 593 695 Antisense
TCCGGCGTCATTGGCACAGTATGGT 494 591 738 Antisense
ACTCACGGAGCGGATGGTTCATTCA 687 97 862 Antisense
Sequence Source Affymetrix Proprietary Database