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[186581_at]

Description Y116F11A.6 /REP_DB=WormBase Gene ID /WP=CE24159 /TR=Q9U3T5 /GB=CAB60759.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 06      4grp_high_8_8 > 29      6grp_highest_nonorm > 53      6grp_total > 72      4grp_total > 26      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 699
1 2 3 4 range
A 508.6
(-3)
P 		903.7
(2.3)
P 		593.2
(-1.9)
P 		959.7
(3)
P 		451
B 509.7
(-3)
P 		846.5
(0.6)
P 		719.2
(-0.7)
P 		1065.4
(3)
P 		556
C 415.1
(-3)
P 		743.8
(-0.2)
P 		468.3
(-2.5)
P 		1113.9
(3)
P 		699
avr 477.8
(-3) 		831.3
(0.7) 		593.6
(-1.8) 		1046.3
(3) 		569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 943
1 2 3 4 5 6 range
A 778.6
(-0.8)
P 		839.5
(-0.4)
P 		1171.8
(1.8)
P 		1354.3
(3)
P 		893.5
(-0)
P 		444.5
(-3)
P 		910
B 646.9
(-1.3)
P 		995.6
(1.3)
P 		1203
(2.8)
P 		1232.5
(3)
P 		1146.5
(2.4)
P 		411.5
(-3)
P 		821
C 630.1
(-1.7)
P 		1004.6
(1.9)
P 		817
(0.1)
P 		1127.5
(3)
P 		1052.2
(2.3)
P 		486.1
(-3)
P 		641
avr 685.2
(-1.2) 		946.6
(0.8) 		1063.9
(1.7) 		1238.1
(3) 		1030.7
(1.4) 		447.4
(-3) 		791
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 185.2
(1.8)
P 		196.2
(3)
P 		155.1
(-1.4)
P 		140.5
(-3)
P 		56
B 162.5
(-3)
P 		209.1
(1.3)
P 		166.7
(-2.6)
P 		227
(3)
P 		65
C 137.4
(-3)
P 		213.9
(3)
P 		163.2
(-1)
P 		187.8
(1)
P 		77
avr 161.7
(-3) 		206.4
(3) 		161.7
(-3) 		185.1
(0.1) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 143.5
(-2.1)
P 		298.6
(1.9)
P 		255.2
(0.7)
P 		343.5
(3)
P 		269.6
(1.1)
P 		108.2
(-3)
P 		235
B 225.1
(-1.6)
P 		331.4
(0.4)
P 		292.1
(-0.3)
P 		326.4
(0.3)
P 		465.8
(3)
P 		153.5
(-3)
P 		312
C 233.5
(-0.6)
P 		306.5
(1.9)
P 		208
(-1.5)
P 		226.7
(-0.8)
P 		340.5
(3)
P 		162.7
(-3)
P 		178
avr 200.7
(-1.4) 		312.2
(1.7) 		251.8
(0) 		298.9
(1.4) 		358.6
(3) 		141.5
(-3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12900
Sequence Type Exemplar sequence
Representative Public ID Y116F11A.6 NCBI
Target Description Y116F11A.6 /REP_DB=WormBase Gene ID /WP=CE24159 /TR=Q9U3T5 /GB=CAB60759.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075417 NCBI Caenorhabditis elegans Y116F11A.6 (Y116F11A.6) mRNA, complete cds. 11/11 None
SNAP00000017811 ENSEMBL cdna:SNAP chromosome:CEL140:V:19725479:19725845:1 11/11 None
GENEFINDER00000017816 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19725479:19725845:1 11/11 None
Y116F11A.6 ENSEMBL cdna:known chromosome:CEL140:V:19725479:19725920:1 gene:Y116F11A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19725478-19725845(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116F11A.6
Entrez Gene 180296 Entrez gene
SwissProt Q9U3T5 EMBL-EBI
WormBase CE24159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60759 Hypothetical protein Y116F11A.6 [Caenorhabditis elegans] ref|NP_507818.1| Y116F11A.6 [Caenorhabditis elegans] 2.0E-51
blast CAE56814 Hypothetical protein CBG24627 [Caenorhabditis briggsae] 6.0E-48
Sequence
Target Sequence 
>C. ELEGANS:186581_AT
ccctccaggccgacaatttggaccgtcttcgtgactcccttcaacagattaacattcgcg
atgtggttccgctgctggtcgcccggaatgtgctcagatcctatgagatgggagctcttt
acgagaagggctcgggcgagcaagttgatgctctaatcgacctgttgaagaccaaaaatc
actgggtcggcccgctaactgatgcactgatcagaaatggaaaagcaccgattgccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCCAGGCCGACAATTTGGACCG 95 259 56 Antisense
ACAATTTGGACCGTCTTCGTGACTC 629 113 68 Antisense
TTCGTGACTCCCTTCAACAGATTAA 318 695 83 Antisense
TTAACATTCGCGATGTGGTTCCGCT 397 681 104 Antisense
GCCCGGAATGTGCTCAGATCCTATG 74 287 136 Antisense
GATGGGAGCTCTTTACGAGAAGGGC 65 407 162 Antisense
GGGCTCGGGCGAGCAAGTTGATGCT 384 493 183 Antisense
GTTGATGCTCTAATCGACCTGTTGA 124 439 199 Antisense
GACCAAAAATCACTGGGTCGGCCCG 27 379 225 Antisense
GCCCGCTAACTGATGCACTGATCAG 17 287 245 Antisense
AAATGGAAAAGCACCGATTGCCACG 374 119 270 Antisense
Sequence Source Affymetrix Proprietary Database