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[186579_at]

Description Y55F3AM.5 /REP_DB=WormBase Gene ID /WP=CE25487 /TR=Q9N372 /GB=AAF60804.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      6grp_total > 38      4grp_total > 38      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 362.8
(3)
P 		272.7
(-0.6)
A 		211.6
(-3)
A 		293.3
(0.2)
A 		151
B 374.6
(3)
P 		299
(-0.6)
M 		275.2
(-1.8)
P 		250
(-3)
A 		125
C 342.5
(3)
P 		247.1
(-3)
P 		251.6
(-2.7)
A 		279
(-1)
A 		95
avr 360
(3) 		272.9
(-1.6) 		246.1
(-3) 		274.1
(-1.5) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 309.7
(2.8)
A 		202.9
(-2.5)
P 		191.8
(-3)
P 		270.7
(0.9)
A 		213.7
(-1.9)
A 		313.9
(3)
P 		122
B 270.5
(3)
P 		199.5
(-3)
M 		207.6
(-2.3)
P 		223.4
(-1)
P 		224
(-0.9)
P 		223.2
(-1)
P 		71
C 289.6
(3)
P 		278.9
(2.6)
A 		226.2
(0.6)
P 		129.3
(-3)
A 		206.8
(-0.1)
P 		251.3
(1.6)
P 		160
avr 289.9
(3) 		227.1
(-1.6) 		208.5
(-2.9) 		207.8
(-3) 		214.8
(-2.5) 		262.8
(1) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 132.1
(3)
P 		59.2
(-1.9)
A 		55.3
(-2.2)
A 		42.9
(-3)
A 		89
B 119.5
(3)
P 		73.8
(-1.1)
M 		63.8
(-2)
P 		53.3
(-3)
A 		66
C 113.4
(3)
P 		71
(-0.8)
P 		87.7
(0.7)
A 		47
(-3)
A 		66
avr 121.7
(3) 		68
(-1.4) 		68.9
(-1.3) 		47.7
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 57.1
(-0.3)
A 		72.2
(2.3)
P 		41.8
(-3)
P 		68.7
(1.7)
A 		64.5
(0.9)
A 		76.4
(3)
P 		35
B 94.1
(3)
P 		66.4
(-0.8)
M 		50.4
(-3)
P 		59.2
(-1.8)
P 		91
(2.6)
P 		83.2
(1.5)
P 		44
C 107.3
(3)
P 		85.1
(1.4)
A 		57.6
(-0.7)
P 		26
(-3)
A 		66.9
(0)
P 		84.1
(1.3)
P 		81
avr 86.2
(3) 		74.6
(1.1) 		49.9
(-3) 		51.3
(-2.8) 		74.1
(1) 		81.2
(2.2) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10825
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.5 NCBI
Target Description Y55F3AM.5 /REP_DB=WormBase Gene ID /WP=CE25487 /TR=Q9N372 /GB=AAF60804.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067620 NCBI Caenorhabditis elegans Y55F3AM.5 (Y55F3AM.5) mRNA, complete cds. 11/11 None
GENEFINDER00000030068 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:999230:1003498:1 11/11 None
Y55F3AM.5 ENSEMBL cdna:known chromosome:CEL140:IV:999230:1002517:1 gene:Y55F3AM.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030047 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:999235-1002523(+) 95.85 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AM.5
Entrez Gene 190307 Entrez gene
SwissProt Q9N372 EMBL-EBI
WormBase CE36752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60804 Hypothetical protein Y55F3AM.5 [Caenorhabditis elegans] ref|NP_500021.2| Y55F3AM.5 [Caenorhabditis elegans] 1.0E-174
blast AAF60804 Hypothetical protein Y55F3AM.5 [Caenorhabditis elegans] ref|NP_500021.2| Y55F3AM.5 [Caenorhabditis elegans] 1.0E-155
blast CAE68283 Hypothetical protein CBG13967 [Caenorhabditis briggsae] 1.0E-143
blast CAE68283 Hypothetical protein CBG13967 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:186579_AT
agcacattttgagcgctcttcgtgtgctcatggagcaatgtggtgagcccgtcaaacgga
gcctactcgacacacaattatcgattacactggttccgctgacgcaaaaatctaatggaa
ttcaaattcccgcgctgaaaatcttagcgctcatgtattcggcagatgacgtggcgattc
cactggagcaaatggactacctcaacactgaatactttcgccgtctgtaccgtcaaattg
gagattttcacaaaatagacgtactcgagttgtgcacaaatttcagttggctcaccgagc
aacagcaaggctccgcccccttatcgatttttcagccaatcagcgaggatccgtattcgt
gtgctcaatttggtattgaattgattcaaaagcttaataagaagtgttcagtccgccccc
tgaagtttctgagccacgtcattgagctcggcgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACATTTTGAGCGCTCTTCGTGT 107 77 461 Antisense
GTGAGCCCGTCAAACGGAGCCTACT 176 459 503 Antisense
TATCGATTACACTGGTTCCGCTGAC 156 659 539 Antisense
CTTAGCGCTCATGTATTCGGCAGAT 31 221 603 Antisense
GATGACGTGGCGATTCCACTGGAGC 700 411 625 Antisense
GCAAATGGACTACCTCAACACTGAA 333 317 648 Antisense
CAACACTGAATACTTTCGCCGTCTG 490 189 663 Antisense
TCGCCGTCTGTACCGTCAAATTGGA 490 599 678 Antisense
CAAATTTCAGTTGGCTCACCGAGCA 494 193 737 Antisense
GAGGATCCGTATTCGTGTGCTCAAT 524 403 805 Antisense
GCCACGTCATTGAGCTCGGCGAGGA 484 269 893 Antisense
Sequence Source Affymetrix Proprietary Database