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[186578_at]

Description Y71F9B.15 /REP_DB=WormBase Gene ID /WP=CE22851 /TR=Q9N4F7 /GB=AAF36013.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 4.6
(-3)
A 		6.9
(-2.3)
A 		5.7
(-2.7)
A 		25.1
(3)
A 		21
B 2.8
(-0.2)
A 		2
(-1.9)
A 		1.5
(-3)
A 		4.3
(3)
A 		3
C 4.5
(-3)
A 		7
(-2.4)
A 		14.5
(-0.8)
A 		31.2
(3)
A 		27
avr 4
(-3) 		5.3
(-2.5) 		7.2
(-1.8) 		20.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.1
(-3)
A 		18.2
(3)
A 		9
(-0.4)
A 		5.6
(-1.7)
A 		4.6
(-2.1)
A 		4.3
(-2.2)
A 		16
B 22.3
(3)
A 		6.1
(-1.9)
A 		17.3
(1.5)
A 		3.4
(-2.7)
A 		4.5
(-2.3)
A 		2.3
(-3)
A 		20
C 2
(-3)
A 		9.5
(-0.8)
A 		2.1
(-3)
A 		22.5
(3)
A 		5.9
(-1.9)
A 		2.8
(-2.8)
A 		21
avr 8.8
(1.2) 		11.3
(3) 		9.5
(1.7) 		10.5
(2.4) 		5
(-1.6) 		3.1
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-2.5)
A 		1.5
(-3)
A 		1.5
(-3)
A 		3.7
(3)
A 		2
B 0.9
(3)
A 		0.5
(-1)
A 		0.3
(-3)
A 		0.9
(3)
A 		1
C 1.5
(-3)
A 		2
(-2.2)
A 		5
(2.5)
A 		5.3
(3)
A 		4
avr 1.4
(-2.7) 		1.3
(-3) 		2.3
(-0) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.5
(3)
A 		2
(-1.4)
A 		1.4
(-2)
A 		1.4
(-2)
A 		1
(-2.4)
A 		6
B 7.8
(3)
A 		2
(-2)
A 		4.2
(-0.1)
A 		0.9
(-3)
A 		1.8
(-2.2)
A 		0.9
(-3)
A 		7
C 0.7
(-2.7)
A 		2.9
(0.6)
A 		0.5
(-3)
A 		4.5
(3)
A 		1.9
(-0.9)
A 		0.9
(-2.4)
A 		4
avr 3
(1.3) 		3.8
(3) 		2.2
(-0.3) 		2.3
(-0.1) 		1.7
(-1.3) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.95
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.15 NCBI
Target Description Y71F9B.15 /REP_DB=WormBase Gene ID /WP=CE22851 /TR=Q9N4F7 /GB=AAF36013.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058642 NCBI Caenorhabditis elegans Y71F9B.15 (Y71F9B.15) mRNA, complete cds. 11/11 None
GENEFINDER00000013362 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2780163:2784212:-1 9/11 None
SNAP00000013316 ENSEMBL cdna:SNAP chromosome:CEL140:I:2782299:2784272:-1 10/11 None
Y71F9B.15 ENSEMBL cdna:known chromosome:CEL140:I:2783049:2784272:-1 gene:Y71F9B.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2783048-2784272(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.15
Entrez Gene 190592 Entrez gene
SwissProt Q9N4F7 EMBL-EBI
WormBase CE22851 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36026 Hypothetical protein Y71F9B.14 [Caenorhabditis elegans] ref|NP_491042.1| Y71F9B.14 [Caenorhabditis elegans] 1.0E-139
blast AAF36013 Hypothetical protein Y71F9B.15 [Caenorhabditis elegans] ref|NP_491043.1| Y71F9B.15 [Caenorhabditis elegans] 1.0E-131
blast AAF36013 Hypothetical protein Y71F9B.15 [Caenorhabditis elegans] ref|NP_491043.1| Y71F9B.15 [Caenorhabditis elegans] 1.0E-92
blast AAF36013 Hypothetical protein Y71F9B.15 [Caenorhabditis elegans] ref|NP_491043.1| Y71F9B.15 [Caenorhabditis elegans] 2.0E-84
blast AAF36026 Hypothetical protein Y71F9B.14 [Caenorhabditis elegans] ref|NP_491042.1| Y71F9B.14 [Caenorhabditis elegans] 1.0E-63
blast AAB96686 Hypothetical protein C46E10.1 [Caenorhabditis elegans] ref|NP_494631.2| C46E10.1 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:186578_AT
ggaaaaatccgcctactattacgatttagacggaggatatcgaacttttatggtgtcgcc
ttaccactttattacggatcttagcattattggatcaaaatatagcatgaaatcttgtaa
agcagactcggctgattggtcagtgcaaggcaaaaccgattggagctgtcattggagctt
tcagtatgcccaggaacgattacttatgtattcaaggtattcaaccttcaactttccgaa
cagaatttataactcaatttttataataggaaagcaacttgtggcaggagatgcggttgt
tgaatgcaaaatcccaaaaagtgaagtgttctgtgcggaattcagccatggagtctctgg
aaatgtattttttgcggcaaacggtgactggacatttgttggatatacaaatcgtgtgtt
gaatagtgataaagcttacgacatcctagagatcgtttacatcaattcgttccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAAATCCGCCTACTATTACGAT 641 523 129 Antisense
TCGAACTTTTATGGTGTCGCCTTAC 571 599 168 Antisense
GTCGCCTTACCACTTTATTACGGAT 569 473 183 Antisense
AAGCAGACTCGGCTGATTGGTCAGT 265 151 248 Antisense
GGCAAAACCGATTGGAGCTGTCATT 300 533 277 Antisense
TGGAGCTTTCAGTATGCCCAGGAAC 687 547 301 Antisense
TATTCAACCTTCAACTTTCCGAACA 572 663 346 Antisense
GTGCGGAATTCAGCCATGGAGTCTC 587 477 461 Antisense
TTTGCGGCAAACGGTGACTGGACAT 291 669 499 Antisense
TAAAGCTTACGACATCCTAGAGATC 233 641 558 Antisense
ATCGTTTACATCAATTCGTTCCGTG 140 35 580 Antisense
Sequence Source Affymetrix Proprietary Database