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[186577_at]

Description Y116A8C.15 /REP_DB=WormBase Gene ID /WP=CE28106 /TR=Q9U2V6 /GB=CAB55121.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 15      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 11.1
(-3)
A 		21.1
(2.6)
A 		16
(-0.3)
A 		21.9
(3)
A 		11
B 20.7
(1.2)
A 		9.3
(-2.6)
A 		26
(3)
A 		8
(-3)
A 		18
C 56.5
(2.3)
A 		18.8
(-2.1)
A 		10.8
(-3)
A 		62.7
(3)
A 		52
avr 29.4
(2.4) 		16.4
(-3) 		17.6
(-2.5) 		30.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 8.4
(-3)
A 		17.8
(-1.7)
A 		16.3
(-1.9)
A 		17.8
(-1.7)
A 		52.3
(3)
A 		49.6
(2.6)
A 		44
B 9.7
(-3)
A 		59.5
(3)
A 		20.6
(-1.7)
A 		51.8
(2.1)
A 		47.3
(1.5)
A 		40.8
(0.7)
A 		50
C 12.8
(-3)
A 		47
(0.3)
A 		19
(-2.4)
A 		75.9
(3)
A 		40.7
(-0.3)
A 		50.5
(0.6)
A 		63
avr 10.3
(-3) 		41.4
(1.9) 		18.6
(-1.7) 		48.5
(3) 		46.8
(2.7) 		47
(2.8) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4
(0.4)
A 		4.6
(3)
A 		4.2
(1.3)
A 		3.2
(-3)
A 		1
B 6.6
(3)
A 		2.3
(-2.3)
A 		6
(2.3)
A 		1.7
(-3)
A 		5
C 18.7
(3)
A 		5.4
(-2.4)
A 		3.8
(-3)
A 		10.6
(-0.3)
A 		15
avr 9.8
(3) 		4.1
(-3) 		4.7
(-2.4) 		5.2
(-1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.5
(-3)
A 		6.3
(-1)
A 		3.5
(-2.2)
A 		4.5
(-1.7)
A 		15.8
(3)
A 		12.1
(1.4)
A 		14
B 3.4
(-3)
A 		19.8
(3)
A 		5
(-2.4)
A 		13.7
(0.8)
A 		19.2
(2.8)
A 		15.2
(1.3)
A 		16
C 4.8
(-3)
A 		14.3
(1.7)
A 		4.8
(-3)
A 		15.3
(2.2)
A 		13.2
(1.2)
A 		16.9
(3)
A 		12
avr 3.2
(-3) 		13.5
(1.8) 		4.4
(-2.4) 		11.2
(0.7) 		16.1
(3) 		14.7
(2.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9424
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.15 NCBI
Target Description Y116A8C.15 /REP_DB=WormBase Gene ID /WP=CE28106 /TR=Q9U2V6 /GB=CAB55121.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070615
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004084 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16995779:17006550:1 11/11 None
GENEFINDER00000004192 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16995779:17005167:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070615 5/11 Cross Hyb Matching Probes A 
Y116A8C.16 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16995784-17005173(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55121 Hypothetical protein Y116A8C.15 [Caenorhabditis elegans] ref|NP_503015.1| Y116A8C.15 [Caenorhabditis elegans] 3.0E-71
blast CAB55121 Hypothetical protein Y116A8C.15 [Caenorhabditis elegans] ref|NP_503015.1| Y116A8C.15 [Caenorhabditis elegans] 1.0E-38
blast CAB55122 Hypothetical protein Y116A8C.16 [Caenorhabditis elegans] ref|NP_503016.1| RhOMboid (Drosophila) related family member (rom-4) [Caenorhabditis elegans] 2.0E-31
blast CAB55122 Hypothetical protein Y116A8C.16 [Caenorhabditis elegans] ref|NP_503016.1| RhOMboid (Drosophila) related family member (rom-4) [Caenorhabditis elegans] 3.0E-31
blast CAE57390 Hypothetical protein CBG00339 [Caenorhabditis briggsae] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186577_AT
gtggtgctggagttgttggctgaagaatcagagcaaaaggatttggaggatggaaggatg
gaggatgttgctggaccgagttttaggattagaagtcggaagcccacgcatccagccatc
gaacgttccatttccctaatcgatgaggtgtttttcgacactccaccacctcatcttcgc
ccaatacctccagaacttcaaggccccgccggaatgccggcgcctgaactagaagcctat
catccagacattgcacagtctccgccgacgtctgcaaagcttgccgccccctcgaaaagt
agcccgtttccatatgaaacagcgaaaatttcagttgtaccggaagttgtcggctatcat
caggctggaaatattagctatatcgatgttggcgatagtacgattaataggccgaagcct
acggttttaggggagcggcaggctcttgtggccagtaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTGCTGGAGTTGTTGGCTGAAG 454 489 1516 Antisense
GAGGATGTTGCTGGACCGAGTTTTA 325 403 1576 Antisense
TTAGAAGTCGGAAGCCCACGCATCC 59 683 1604 Antisense
TCGAACGTTCCATTTCCCTAATCGA 695 599 1634 Antisense
TGAGGTGTTTTTCGACACTCCACCA 309 567 1659 Antisense
CAATACCTCCAGAACTTCAAGGCCC 695 179 1697 Antisense
TGCCGGCGCCTGAACTAGAAGCCTA 498 585 1730 Antisense
GAAGCCTATCATCCAGACATTGCAC 59 345 1747 Antisense
GAAAAGTAGCCCGTTTCCATATGAA 525 353 1809 Antisense
GTTGTCGGCTATCATCAGGCTGGAA 516 437 1861 Antisense
CGGCAGGCTCTTGTGGCCAGTAAAA 275 243 1951 Antisense
Sequence Source Affymetrix Proprietary Database