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[186575_s_at]

Description C07E3.2 /REP_DB=WormBase Gene ID /WP=CE15606 /TR=SW:O17580 /GB=CAB16466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 50      4grp_high_8_8 > 41      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 46      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 1253.9
(3)
P 		840.5
(-1.4)
P 		689.2
(-3)
P 		765.9
(-2.2)
P 		565
B 1244.4
(3)
P 		812.1
(-2.1)
P 		785.1
(-2.4)
P 		732.9
(-3)
P 		512
C 1158.3
(3)
P 		874.2
(0.2)
P 		796.1
(-0.6)
P 		552.1
(-3)
P 		606
avr 1218.9
(3) 		842.3
(-1.2) 		756.8
(-2.2) 		683.6
(-3) 		535

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 557
1 2 3 4 5 6 range
A 609.7
(-2.4)
P 		732.5
(-0.9)
P 		557.6
(-3)
P 		862.8
(0.7)
P 		603.1
(-2.4)
P 		1051.5
(3)
P 		494
B 582.6
(-3)
P 		609.4
(-2.7)
P 		666
(-2)
P 		716.2
(-1.4)
P 		773.1
(-0.7)
P 		1088.4
(3)
P 		506
C 632.5
(-2.9)
P 		662.6
(-2.6)
P 		799.6
(-0.9)
P 		864
(-0.1)
P 		626.2
(-3)
P 		1114.5
(3)
P 		488
avr 608.3
(-3) 		668.2
(-2.2) 		674.4
(-2.2) 		814.3
(-0.4) 		667.5
(-2.3) 		1084.8
(3) 		477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 456.5
(3)
P 		182.5
(-1.8)
P 		180.2
(-1.8)
P 		112.1
(-3)
P 		344
B 396.8
(3)
P 		200.6
(-1.9)
P 		181.9
(-2.4)
P 		156.2
(-3)
P 		241
C 383.4
(3)
P 		251.3
(0.3)
P 		277.5
(0.8)
P 		93.1
(-3)
P 		290
avr 412.2
(3) 		211.5
(-1.1) 		213.2
(-1.1) 		120.5
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 112.4
(-3)
P 		260.5
(3)
P 		121.4
(-2.6)
P 		218.8
(1.3)
P 		182
(-0.2)
P 		256
(2.8)
P 		148
B 202.7
(-2)
P 		202.9
(-2)
P 		161.7
(-3)
P 		189.7
(-2.3)
P 		314.1
(0.7)
P 		405.8
(3)
P 		244
C 234.5
(-1.2)
P 		202.2
(-2.1)
P 		203.5
(-2.1)
P 		173.8
(-3)
P 		202.6
(-2.1)
P 		373.1
(3)
P 		199
avr 183.2
(-2.3) 		221.9
(-1) 		162.2
(-3) 		194.1
(-2) 		232.9
(-0.7) 		345
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186575_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3850
Sequence Type Exemplar sequence
Representative Public ID C07E3.2 NCBI
Target Description C07E3.2 /REP_DB=WormBase Gene ID /WP=CE15606 /TR=SW:O17580 /GB=CAB16466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063823 NCBI Caenorhabditis elegans C07E3.2 (C07E3.2) mRNA, complete cds. 11/11 None
SNAP00000022897 ENSEMBL cdna:SNAP chromosome:CEL140:II:10340030:10342066:-1 10/11 None
C07E3.2.1 ENSEMBL cdna:known chromosome:CEL140:II:10339602:10345022:-1 gene:C07E3.2 11/11 None
C07E3.2.2 ENSEMBL cdna:known chromosome:CEL140:II:10339756:10345026:-1 gene:C07E3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014968 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014970 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022898 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10339752-10345018(-) 95.58 100.0
Public Domain and Genome References
Gene Title
Ensembl C07E3.2
Entrez Gene 174598 Entrez gene
SwissProt O17580 EMBL-EBI
WormBase CE15606 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265326_AT expressed protein at
CANINE_2:CFAAFFX.29595.1.S1_AT similar to UPF0120 protein DKFZp564C186 cfa
CANINE_2:CFAAFFX.29595.1.S1_S_AT similar to UPF0120 protein DKFZp564C186 cfa
DROSOPHILA_2:1637866_AT dm
DROSGENOME1:155156_AT dm
CHICKEN:GGA.9907.1.S1_S_AT similar to CDNA sequence AF155546 gga
CHICKEN:GGAAFFX.12448.1.S1_AT similar to CDNA sequence AF155546 gga
HG-U133_PLUS_2:202115_S_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
HG-U133A:202115_S_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
HG-U133A_2:202115_S_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
HU35KSUBA:AA281338_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
U133_X3P:G7661605_3P_A_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
U133_X3P:HS2.282541.1.S1_3P_X_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
U133_X3P:HS2.282541.1.S1_3P_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
U133_X3P:1559139_3P_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:1559139_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
HG-U95AV2:41861_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
HG-U95C:63975_S_AT nucleolar complex associated 2 homolog (S. cerevisiae) hs
YEAST_2:1773719_AT Protein that forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes, as well as a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors Sc
Protein Similarities
Method ID Description E-Value
blast CAA90103 Hypothetical protein C07E3.2 [Caenorhabditis elegans] emb|CAB16466.1| Hypothetical protein C07E3.2 [Caenorhabditis elegans] emb|CAB04627.1| Hypothetical protein C07E3.2 [Caenorhabditis elegans] ref|NP_496224.1| C07E3.2 [Caenorhabditis elegans] sp|O17580|NOC2L_CAEEL Nucleolar complex protein 2 homolog (NOC2 protein homolog) 0.0
blast CAE59376 Hypothetical protein CBG02729 [Caenorhabditis briggsae] 0.0
blast CAA90103 Hypothetical protein C07E3.2 [Caenorhabditis elegans] emb|CAB16466.1| Hypothetical protein C07E3.2 [Caenorhabditis elegans] emb|CAB04627.1| Hypothetical protein C07E3.2 [Caenorhabditis elegans] ref|NP_496224.1| C07E3.2 [Caenorhabditis elegans] sp|O17580|NOC2L_CAEEL Nucleolar complex protein 2 homolog (NOC2 protein homolog) 1.0E-180
blast CAE59376 Hypothetical protein CBG02729 [Caenorhabditis briggsae] 1.0E-170
blast AAT68155 DKFZP564C186-like [Danio rerio] ref|NP_001003830.1| hypothetical protein LOC58013 [Danio rerio] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR005343 EMBL-EBI Protein of unknown function UPF0120 1.0E-126
Pfam IPR005343 EMBL-EBI Protein of unknown function UPF0120 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186575_S_AT
attctcagatcttccacagtggcgaaaagtcatctcagaacatgtgttcagaactatgat
gcagtctgcacatcttttggctagtcaagccgcatttccggacgtcgttttgccgatcaa
tcatagaatttccgcaatcctagaaacaatgaaaaatggagatcacgctcacttgttccg
cggattccaaacaaaactgaaagagcactcaagatttgtgcttgatgttcttgctcgcaa
gagtgtcgatattaatgatgagatgcaagtgcgtgccgtccgctttgatctcaacaatca
tgactcgccgatcaagacattctatcggcaatgggagaaagtatggaagatgaaggaaag
aagtgctgtggagaactcgaagaaagacgacaaaaagaaaaagaaggaagaagaagctgc
tgctgcgaaaaaaagaaaacctaatgaaactgtcgaggacgaggatgatgtcaagccaga
ggtttcgaaggcaaagaggaagagaatcaagattggagcagctgccaagaaagcagacgc
ctctgttccagatcaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTCAGATCTTCCACAGTGGCGA 696 9 1569 Antisense
GCAGTCTGCACATCTTTTGGCTAGT 554 311 1629 Antisense
CTAGTCAAGCCGCATTTCCGGACGT 152 223 1649 Antisense
TTCCGGACGTCGTTTTGCCGATCAA 46 699 1664 Antisense
AATGGAGATCACGCTCACTTGTTCC 231 163 1723 Antisense
CACTTGTTCCGCGGATTCCAAACAA 310 195 1738 Antisense
TTGTGCTTGATGTTCTTGCTCGCAA 410 707 1784 Antisense
GATGAGATGCAAGTGCGTGCCGTCC 429 401 1825 Antisense
CGTCCGCTTTGATCTCAACAATCAT 77 247 1845 Antisense
GACTCGCCGATCAAGACATTCTATC 596 373 1870 Antisense
AGACGCCTCTGTTCCAGATCAATTT 267 71 2103 Antisense
Sequence Source Affymetrix Proprietary Database