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[186574_at]

Description Y54E10A.2 /REP_DB=WormBase Gene ID /WP=CE24446 /TR=Q9N3E3 /GB=AAF60761.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 19      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 40.2
(-1.2)
A 		17.7
(-3)
A 		18.8
(-2.9)
A 		91.1
(3)
A 		73
B 39
(-1.1)
A 		63.6
(3)
A 		27.2
(-3)
A 		54.3
(1.5)
A 		36
C 50.3
(-1.9)
A 		57.3
(-1.5)
A 		33.7
(-3)
A 		126.7
(3)
A 		93
avr 43.2
(-1.4) 		46.2
(-1.2) 		26.6
(-3) 		90.7
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 12.4
(-3)
A 		20.5
(-2)
A 		34.9
(-0.2)
A 		53.9
(2.1)
A 		32.8
(-0.5)
A 		60.8
(3)
A 		48
B 37.4
(-0.9)
A 		63.1
(1.8)
A 		28.4
(-1.8)
A 		17.4
(-3)
A 		52.4
(0.7)
A 		74
(3)
A 		57
C 67.7
(2.4)
A 		37.5
(-1.1)
A 		21.5
(-3)
A 		41.2
(-0.7)
A 		28.9
(-2.1)
A 		72.4
(3)
A 		51
avr 39.2
(-1.4) 		40.4
(-1.2) 		28.3
(-3) 		37.5
(-1.6) 		38
(-1.6) 		69.1
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.6
(3)
A 		3.8
(-3)
A 		4.9
(-2.4)
A 		13.3
(2.3)
A 		11
B 12.4
(0.9)
A 		15.7
(3)
A 		6.3
(-3)
A 		11.6
(0.4)
A 		9
C 16.7
(0.1)
A 		16.5
(-0)
A 		11.7
(-3)
A 		21.4
(3)
A 		10
avr 14.6
(2.4) 		12
(0.4) 		7.6
(-3) 		15.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.3
(-3)
A 		7.3
(-0.6)
A 		7.6
(-0.5)
A 		13.7
(2.5)
A 		9.9
(0.6)
A 		14.8
(3)
A 		13
B 13
(-0.8)
A 		21
(1.3)
A 		6.9
(-2.4)
A 		4.6
(-3)
A 		21.3
(1.4)
A 		27.6
(3)
A 		23
C 25.1
(3)
A 		11.4
(-1.2)
A 		5.5
(-3)
A 		8.3
(-2.1)
A 		9.3
(-1.8)
A 		24.2
(2.7)
A 		20
avr 13.5
(-0.4) 		13.2
(-0.5) 		6.7
(-3) 		8.9
(-2.1) 		13.5
(-0.4) 		22.2
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.79
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.2 NCBI
Target Description Y54E10A.2 /REP_DB=WormBase Gene ID /WP=CE24446 /TR=Q9N3E3 /GB=AAF60761.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058727 NCBI Caenorhabditis elegans Y54E10A.2 (Y54E10A.2) mRNA, complete cds. 11/11 None
SNAP00000033836 ENSEMBL cdna:SNAP chromosome:CEL140:I:3233392:3244347:1 11/11 None
GENEFINDER00000033852 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3234861:3243097:1 11/11 None
Y54E10A.2 ENSEMBL cdna:known chromosome:CEL140:I:3233392:3242489:1 gene:Y54E10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3234376-3242489(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.2
Entrez Gene 3565555 Entrez gene
SwissProt Q9N3E3 EMBL-EBI
WormBase CE34407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60761 Hypothetical protein Y54E10A.2 [Caenorhabditis elegans] ref|NP_491128.3| Y54E10A.2 [Caenorhabditis elegans] 0.0
blast CAE68993 Hypothetical protein CBG14980 [Caenorhabditis briggsae] 0.0
blast CAE68993 Hypothetical protein CBG14980 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033852 1 382-404
Sequence
Target Sequence 
>C. ELEGANS:186574_AT
acaagtgacggtccacagacagcaatattcgatgaacgtacctatcatcccgattctcaa
tcacatattggtatatcaacacaactttacaacaaaaaaatttctggttttttagacaaa
aatgaatttaaaaaaatgttcggtctgaaaaattcactgttttggtttttttcggcgaaa
ttgaatttttttgtcttttttcttcaaaaatggtggttttcggtcaaaaaacactttttt
ttcgttttgttgcaaaaaaattttgctaattttcagtcgtgggcaggaaagaactgcgtc
aaaactctctgggaatctctggaacaaacgaacgagaaatgtgctcaattcgaaacgatc
tgcaccccaatggctgatatggccacgtccaatgctctcaaagaaacgatggccacaaat
gtgctccagcttctgctccgtctttgtgaactccactcggacaagcaggaaggatcggcg
aggttcttggcgagagctcgtctggcacttgcgttggttcattcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGTGACGGTCCACAGACAGCAA 422 113 1084 Antisense
GATGAACGTACCTATCATCCCGATT 314 409 1114 Antisense
GCGTCAAAACTCTCTGGGAATCTCT 458 291 1379 Antisense
GCTCAATTCGAAACGATCTGCACCC 181 301 1426 Antisense
GATCTGCACCCCAATGGCTGATATG 194 419 1440 Antisense
GGCTGATATGGCCACGTCCAATGCT 557 539 1455 Antisense
GATGGCCACAAATGTGCTCCAGCTT 153 407 1491 Antisense
TCCGTCTTTGTGAACTCCACTCGGA 243 595 1520 Antisense
GAAGGATCGGCGAGGTTCTTGGCGA 124 333 1552 Antisense
TTCTTGGCGAGAGCTCGTCTGGCAC 471 689 1567 Antisense
CTGGCACTTGCGTTGGTTCATTCAG 357 241 1585 Antisense
Sequence Source Affymetrix Proprietary Database