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[186573_at]

Description Y116A8C.40 /REP_DB=WormBase Gene ID /WP=CE23344 /TR=Q9U2T7 /GB=CAB55140.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 52.7
(-0.2)
A 		71.1
(2.7)
A 		35.2
(-3)
A 		72.8
(3)
A 		38
B 64.6
(3)
P 		60.3
(2.5)
A 		11.9
(-3)
A 		61.3
(2.6)
M 		53
C 65.6
(0.7)
P 		59.9
(0.3)
P 		20.3
(-3)
A 		93.3
(3)
P 		73
avr 61
(1.3) 		63.8
(1.6) 		22.5
(-3) 		75.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 62.4
(1.8)
P 		33.5
(-2.5)
A 		41.4
(-1.3)
A 		34.3
(-2.3)
A 		29.9
(-3)
A 		70.5
(3)
P 		41
B 52
(2.8)
P 		53.1
(3)
P 		40.9
(1.1)
A 		35.2
(0.2)
A 		30.1
(-0.6)
A 		15.2
(-3)
A 		38
C 26.4
(-2.3)
A 		60.1
(1.6)
M 		72.8
(3)
P 		61.6
(1.7)
A 		33.1
(-1.5)
A 		20.1
(-3)
A 		53
avr 46.9
(1.6) 		48.9
(2.2) 		51.7
(3) 		43.7
(0.7) 		31
(-3) 		35.3
(-1.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.2
(3)
A 		15.4
(0.7)
A 		9.2
(-3)
A 		10.7
(-2.1)
A 		10
B 20.6
(3)
P 		14.9
(1.1)
A 		2.8
(-3)
A 		13.1
(0.5)
M 		18
C 21.7
(3)
P 		17.2
(1.2)
P 		7.1
(-3)
A 		15.7
(0.5)
P 		15
avr 20.5
(3) 		15.8
(1) 		6.4
(-3) 		13.2
(-0.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.5
(-1)
P 		11.9
(-0.7)
A 		9
(-2.8)
A 		8.7
(-3)
A 		9
(-2.8)
A 		17.2
(3)
P 		9
B 18.1
(3)
P 		17.7
(2.8)
P 		9.9
(-1)
A 		9.3
(-1.3)
A 		12.2
(0.1)
A 		5.7
(-3)
A 		12
C 9.8
(-1.4)
A 		18.3
(2.9)
M 		18.5
(3)
P 		12.4
(-0.1)
A 		10.7
(-1)
A 		6.7
(-3)
A 		12
avr 13.1
(0.1) 		16
(3) 		12.5
(-0.4) 		10.1
(-2.8) 		10.6
(-2.3) 		9.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9023
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.40 NCBI
Target Description Y116A8C.40 /REP_DB=WormBase Gene ID /WP=CE23344 /TR=Q9U2T7 /GB=CAB55140.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070639 NCBI Caenorhabditis elegans Y116A8C.40 (Y116A8C.40) mRNA, complete cds. 11/11 None
GENEFINDER00000004181 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17144311:17147184:-1 11/11 None
Y116A8C.40 ENSEMBL cdna:known chromosome:CEL140:IV:17144311:17147184:-1 gene:Y116A8C.40 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004115 7/11 Cross Hyb Matching Probes None
SNAP00000004116 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17144316-17147190(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.40
Entrez Gene 191007 Entrez gene
SwissProt Q9U2T7 EMBL-EBI
WormBase CE23344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55140 Hypothetical protein Y116A8C.40 [Caenorhabditis elegans] ref|NP_503040.1| Y116A8C.40 [Caenorhabditis elegans] 1.0E-159
blast CAE57398 Hypothetical protein CBG00350 [Caenorhabditis briggsae] 1.0E-126
blast CAE57397 Hypothetical protein CBG00349 [Caenorhabditis briggsae] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.9E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503040.1 4 53-75,119-141,169-191,196-218
Y116A8C.40 4 53-75,119-141,169-191,196-218
GENEFINDER00000004181 4 53-75,119-141,169-191,196-218
Sequence
Target Sequence 
>C. ELEGANS:186573_AT
acattatcgtgtatttccagccaacaggcgcagacgggaagccccatcctgatccgaaga
tcttttttgcgattgggtgcatgtggtacatgattatctcctcaatgttctcggtgttct
atttcggaatgcgttgctactggcaaatccgaaaaacaatttcccaatcggcgaccgtct
cgaccactactaaaaacctacaaagtcagctgttcaatgccctggtagtacaaacattca
ttccactggtccttatgtacatcccgatcggtatcctgttcttcttcccgatggtcatgt
gggaattgccgtttatcaccgaatttgtgggatatacgattgcattgtacccggcgattg
acccacttcccaatatgatcatcatcaaggtctaccggaatgctattgttgaattcttca
gaaaagtaattggacgtggaaaacgcggcgaaggtcaacactcgatcaatacagtcgacg
ctgcgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTATCGTGTATTTCCAGCCAAC 13 105 308 Antisense
AATGTTCTCGGTGTTCTATTTCGGA 274 161 411 Antisense
AAAGTCAGCTGTTCAATGCCCTGGT 419 119 509 Antisense
GTACAAACATTCATTCCACTGGTCC 482 461 535 Antisense
TTCCACTGGTCCTTATGTACATCCC 423 701 548 Antisense
GTACATCCCGATCGGTATCCTGTTC 117 461 564 Antisense
GGGAATTGCCGTTTATCACCGAATT 180 487 608 Antisense
TATACGATTGCATTGTACCCGGCGA 510 657 640 Antisense
TGACCCACTTCCCAATATGATCATC 607 569 666 Antisense
AACGCGGCGAAGGTCAACACTCGAT 427 145 749 Antisense
GATCAATACAGTCGACGCTGCGTCG 201 423 771 Antisense
Sequence Source Affymetrix Proprietary Database