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[186572_at]

Description Y77E11A.3 /REP_DB=WormBase Gene ID /WP=CE25617 /TR=Q9N4B0 /GB=AAF36073.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 7.2
(-3)
A 		13.1
(-2.5)
A 		72.6
(3)
A 		37.9
(-0.2)
A 		65
B 10.6
(-2.8)
A 		11.9
(-2.6)
A 		8.9
(-3)
A 		50.2
(3)
A 		41
C 5.1
(-3)
A 		8.1
(-2.7)
A 		31.2
(-0.7)
A 		72.8
(3)
A 		68
avr 7.6
(-3) 		11
(-2.6) 		37.6
(0.9) 		53.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 4.5
(-3)
A 		9.9
(-2.7)
A 		24.2
(-1.8)
A 		5.3
(-3)
A 		16.7
(-2.3)
A 		106.4
(3)
A 		102
B 7.2
(-2.8)
A 		17.6
(-0.2)
A 		30.4
(3)
A 		25.1
(1.7)
A 		6.3
(-3)
A 		13.2
(-1.3)
A 		24
C 21.3
(-1)
A 		9.4
(-2.3)
A 		47.6
(1.8)
A 		58.8
(3)
A 		7.2
(-2.5)
A 		2.6
(-3)
A 		56
avr 11
(-2.8) 		12.3
(-2.6) 		34.1
(1.7) 		29.7
(0.8) 		10.1
(-3) 		40.7
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.6
(-3)
A 		2.8
(-2.9)
A 		19
(3)
A 		5.6
(-1.9)
A 		16
B 3.4
(-2.1)
A 		2.9
(-2.4)
A 		2.1
(-3)
A 		10.7
(3)
A 		9
C 1.7
(-3)
A 		2.3
(-2.7)
A 		10.9
(2.2)
A 		12.3
(3)
A 		11
avr 2.6
(-3) 		2.7
(-2.9) 		10.7
(3) 		9.5
(2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.5
(-2.4)
A 		5.3
(-1.9)
A 		1.3
(-2.9)
A 		5
(-2)
A 		25.9
(3)
A 		25
B 2.5
(-3)
A 		5.9
(1.2)
A 		7.4
(3)
A 		6.7
(2.1)
A 		2.6
(-2.9)
A 		4.9
(-0.1)
A 		5
C 7.9
(0.8)
A 		2.9
(-1.9)
A 		12.1
(3)
A 		11.8
(2.8)
A 		2.3
(-2.3)
A 		0.9
(-3)
A 		11
avr 3.7
(-2.7) 		4.1
(-2.3) 		8.3
(1.1) 		6.6
(-0.3) 		3.3
(-3) 		10.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11120
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.3 NCBI
Target Description Y77E11A.3 /REP_DB=WormBase Gene ID /WP=CE25617 /TR=Q9N4B0 /GB=AAF36073.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067682
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000027311 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1447593:1448315:1 None
Y77E11A.3 ENSEMBL cdna:known chromosome:CEL140:IV:1446403:1448315:1 gene:Y77E11A.3 None
NM_067682 NCBI Caenorhabditis elegans Y77E11A.3 (Y77E11A.3) mRNA, complete cds. None
GENEFINDER00000027329 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1447568:1448315:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000412 1/11 Cross Hyb Matching Probes None
SNAP00000033624 1/11 Cross Hyb Matching Probes None
SNAP00000021186 1/11 Cross Hyb Matching Probes None
SNAP00000035032 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1446408-1448745(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y77E11A.3
Entrez Gene 190735 Entrez gene
SwissProt Q9N4B0 EMBL-EBI
WormBase CE36901 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36073 Hypothetical protein Y77E11A.3 [Caenorhabditis elegans] ref|NP_500083.2| Y77E11A.3 [Caenorhabditis elegans] 2.0E-64
blast AAF36073 Hypothetical protein Y77E11A.3 [Caenorhabditis elegans] ref|NP_500083.2| Y77E11A.3 [Caenorhabditis elegans] 6.0E-41
blast AAF36073 Hypothetical protein Y77E11A.3 [Caenorhabditis elegans] ref|NP_500083.2| Y77E11A.3 [Caenorhabditis elegans] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:186572_AT
tctaggccagcagcagttcaacgcaggaaactgttactttttcgttaaccaagtgttcca
acacattgaactttggcctaacaccaatccgaaccgggagcacatgatcaatttggcccg
tgcttacctcgatggacaaattgtggaacttcaacaagaagttcacgccgagcttgccac
cgacgaagctcgctgcgcatacctcgacgatccgtatgcacaggcaaagcggaaagtgcc
caaaacgatccgttcacggaccggaaacggctcaaatttaagaacagttcacggttcgat
tcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAGGCCAGCAGCAGTTCAACGCA 609 613 120 Antisense
ACACATTGAACTTTGGCCTAACACC 212 109 180 Antisense
AACACCAATCCGAACCGGGAGCACA 246 115 199 Antisense
ACATGATCAATTTGGCCCGTGCTTA 280 107 221 Antisense
CCGTGCTTACCTCGATGGACAAATT 451 265 237 Antisense
AACAAGAAGTTCACGCCGAGCTTGC 382 133 272 Antisense
CGAGCTTGCCACCGACGAAGCTCGC 214 251 288 Antisense
TACCTCGACGATCCGTATGCACAGG 123 651 319 Antisense
GAAAGTGCCCAAAACGATCCGTTCA 360 359 351 Antisense
TTCACGGACCGGAAACGGCTCAAAT 134 669 372 Antisense
AGAACAGTTCACGGTTCGATTCCCG 51 73 400 Antisense
Sequence Source Affymetrix Proprietary Database