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[186571_at]

Description Y106G6H.13 /REP_DB=WormBase Gene ID /WP=CE20422 /TR=Q9XWS1 /GB=CAA21576.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 10.4
(-3)
A 		35.5
(3)
A 		13.4
(-2.3)
A 		25.2
(0.5)
A 		25
B 7.1
(-2.6)
A 		5.7
(-3)
A 		9.6
(-2)
A 		29.4
(3)
A 		24
C 31.9
(1)
A 		22.6
(-0.4)
A 		4.3
(-3)
A 		46
(3)
A 		42
avr 16.5
(-1.2) 		21.3
(0) 		9.1
(-3) 		33.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 55.5
(-2.7)
A 		31.6
(-3)
A 		36
(-2.9)
A 		41.2
(-2.9)
A 		308.6
(0.4)
P 		523.7
(3)
P 		492
B 18.6
(-2.8)
A 		6.5
(-3)
A 		9.9
(-3)
A 		20.6
(-2.8)
A 		459.7
(3)
P 		390.1
(2.1)
P 		453
C 37.5
(-2.6)
A 		8.4
(-3)
A 		14.1
(-2.9)
A 		90.1
(-2)
A 		367.3
(1.3)
P 		506.8
(3)
P 		498
avr 37.2
(-2.7) 		15.5
(-3) 		20
(-2.9) 		50.6
(-2.5) 		378.5
(1.8) 		473.5
(3) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.8
(-2.6)
A 		7.7
(3)
A 		3.5
(-3)
A 		3.7
(-2.7)
A 		4
B 2.3
(-1.9)
A 		1.4
(-3)
A 		2.2
(-2)
A 		6.3
(3)
A 		5
C 10.6
(3)
A 		6.5
(0.3)
A 		1.5
(-3)
A 		7.8
(1.2)
A 		9
avr 5.6
(2.5) 		5.2
(1.8) 		2.4
(-3) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 10.2
(-2.9)
A 		11.2
(-2.8)
A 		7.8
(-3)
A 		10.4
(-2.9)
A 		93.1
(1.3)
P 		127.5
(3)
P 		120
B 6.5
(-2.9)
A 		2.2
(-3)
A 		2.4
(-3)
A 		5.5
(-2.9)
A 		186.8
(3)
P 		145.5
(1.7)
P 		185
C 13.9
(-2.6)
A 		2.6
(-3)
A 		3.6
(-3)
A 		18.1
(-2.4)
A 		118.9
(1.2)
P 		169.7
(3)
P 		167
avr 10.2
(-2.8) 		5.3
(-3) 		4.6
(-3) 		11.3
(-2.7) 		132.9
(2.4) 		147.6
(3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1926
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.13 NCBI
Target Description Y106G6H.13 /REP_DB=WormBase Gene ID /WP=CE20422 /TR=Q9XWS1 /GB=CAA21576.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060336 NCBI Caenorhabditis elegans Y106G6H.13 (Y106G6H.13) mRNA, complete cds. 11/11 None
SNAP00000001710 ENSEMBL cdna:SNAP chromosome:CEL140:I:10479634:10480050:1 11/11 None
GENEFINDER00000001717 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10479634:10480050:1 11/11 None
Y106G6H.13 ENSEMBL cdna:known chromosome:CEL140:I:10479634:10480050:1 gene:Y106G6H.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037415 2/11 Cross Hyb Matching Probes None
SNAP00000037405 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10479564-10479981(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.13
Entrez Gene 190929 Entrez gene
SwissProt Q9XWS1 EMBL-EBI
WormBase CE20422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21576 Hypothetical protein Y106G6H.13 [Caenorhabditis elegans] ref|NP_492737.1| Y106G6H.13 [Caenorhabditis elegans] 2.0E-75
blast CAE58948 Hypothetical protein CBG02216 [Caenorhabditis briggsae] 7.0E-45
Sequence
Target Sequence 
>C. ELEGANS:186571_AT
ggcatacgtcgagagcttctacatggatgctagtttggagagcgacgccgacgttcttcc
agcatcggagagtgatatgtttgaggcacaattcattgccgatgtcccactcgacggcga
cgcgatcattcgtatcgttgattcacaactcgcttttgagcaacgcaaccacgttgtgtc
ggactattgcaccatgaaggccgcggagctcgagaagaacccgaatcaactgacaatgaa
cagctcagttatggacaatcagcaatattttgccccgccaaaaagtgaatcgtcgcaata
tgcatggaacacgaatgatgttgtctcttctcatcatcaatatgctgctcagagcccaaa
catctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATACGTCGAGAGCTTCTACATG 344 537 15 Antisense
AGTTTGGAGAGCGACGCCGACGTTC 163 61 46 Antisense
GACGTTCTTCCAGCATCGGAGAGTG 494 377 64 Antisense
GGCACAATTCATTGCCGATGTCCCA 303 535 99 Antisense
GGCGACGCGATCATTCGTATCGTTG 661 537 130 Antisense
ACTCGCTTTTGAGCAACGCAACCAC 492 97 162 Antisense
GCAACCACGTTGTGTCGGACTATTG 632 319 179 Antisense
GGACTATTGCACCATGAAGGCCGCG 533 525 195 Antisense
GGCCGCGGAGCTCGAGAAGAACCCG 622 541 213 Antisense
AATCAGCAATATTTTGCCCCGCCAA 470 171 271 Antisense
TGCTGCTCAGAGCCCAAACATCTAC 126 581 357 Antisense
Sequence Source Affymetrix Proprietary Database