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[186570_at] 7TM chemoreceptor, sri family

Description Y102A5C.29 /REP_DB=WormBase Gene ID /WP=CE20401 /TR=Q9XX84 /GB=CAA20951.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 28      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 9.2
(-3)
A 		19.2
(-0.1)
A 		9.8
(-2.8)
A 		30.1
(3)
A 		21
B 28.7
(0.4)
A 		43.8
(3)
A 		11.8
(-2.5)
A 		9
(-3)
A 		35
C 60.6
(0.5)
A 		36.7
(-1)
A 		6.8
(-3)
A 		98.1
(3)
A 		91
avr 32.8
(0.9) 		33.2
(0.9) 		9.5
(-3) 		45.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.9
(-1.1)
A 		4.3
(-2.5)
A 		25.9
(3)
A 		18.8
(1.2)
A 		9.6
(-1.2)
A 		2.5
(-3)
A 		23
B 7.6
(-2.2)
A 		36.3
(3)
A 		4.5
(-2.8)
A 		4.2
(-2.9)
A 		3.4
(-3)
A 		21.8
(0.4)
A 		33
C 4.3
(-2.8)
A 		15.7
(0.6)
A 		3.8
(-3)
A 		23.7
(3)
A 		5.3
(-2.5)
A 		6
(-2.3)
A 		20
avr 7.3
(-2.4) 		18.8
(3) 		11.4
(-0.5) 		15.6
(1.5) 		6.1
(-3) 		10.1
(-1.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.4
(-0.3)
A 		4.2
(2.3)
A 		2.6
(-3)
A 		4.4
(3)
A 		2
B 9.2
(1.9)
A 		10.8
(3)
A 		2.7
(-2.5)
A 		1.9
(-3)
A 		9
C 20.1
(3)
A 		10.6
(-0.2)
A 		2.4
(-3)
A 		16.5
(1.8)
A 		18
avr 10.9
(3) 		8.5
(1.3) 		2.6
(-3) 		7.6
(0.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-1.6)
A 		1.5
(-1.9)
A 		5.6
(3)
A 		4.8
(2)
A 		2.9
(-0.2)
A 		0.6
(-3)
A 		5
B 2.6
(-2.2)
A 		12.1
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		1.4
(-2.8)
A 		8.1
(0.8)
A 		11
C 1.6
(-2.1)
A 		4.8
(3)
A 		1
(-3)
A 		4.8
(3)
A 		1.7
(-1.9)
A 		2
(-1.4)
A 		4
avr 2
(-3) 		6.1
(3) 		2.6
(-2.1) 		3.6
(-0.7) 		2
(-3) 		3.6
(-0.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14053
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.29 NCBI
Target Description Y102A5C.29 /REP_DB=WormBase Gene ID /WP=CE20401 /TR=Q9XX84 /GB=CAA20951.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074900 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-9) (sri-9) mRNA, complete cds. 11/11 None
SNAP00000003168 ENSEMBL cdna:SNAP chromosome:CEL140:V:17004045:17006165:1 11/11 None
GENEFINDER00000003180 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17004045:17006165:1 11/11 None
Y102A5C.29 ENSEMBL cdna:known chromosome:CEL140:V:17004045:17006165:1 gene:Y102A5C.29 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17004044-17006165(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-9
Ensembl Y102A5C.29
Entrez Gene 190852 Entrez gene
SwissProt Q9XX84 EMBL-EBI
WormBase CE20401 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20951 Hypothetical protein Y102A5C.29 [Caenorhabditis elegans] ref|NP_507301.1| Serpentine Receptor, class I family member (sri-9) [Caenorhabditis elegans] 0.0
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 1.0E-124
blast CAB01514 Hypothetical protein T09E8.5 [Caenorhabditis elegans] ref|NP_506280.2| Serpentine Receptor, class I family member (sri-6) [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507301.1 7 15-37,49-71,95-117,138-155,194-216,244-266,276-298
Y102A5C.29 7 15-37,49-71,95-117,138-155,194-216,244-266,276-298
SNAP00000003168 7 15-37,49-71,95-117,138-155,194-216,244-266,276-298
GENEFINDER00000003180 7 15-37,49-71,95-117,138-155,194-216,244-266,276-298
Sequence
Target Sequence 
>C. ELEGANS:186570_AT
cctttggcacctggcagtgtcaaaataccactgagcagaaatatgagtatgtgcggcaaa
attatccacagtgcctattttgggtagccaatgacaatttcgaggcgtatgactatcatg
aaaatccttggattataaggactgtcggtgcggggattggcttcttggttgtcagttcag
cccatggcgcatttctcggtgtccatacaatgattgttctccaacgcctccgatcccata
tgtcagtgcaaacctatcaaatgcaccggacagcactaataagtttggcaatgcaaatgg
tctgcccgtgtgttttcatttttgtagtttatttctatgcactagtggcctggatagatg
atgttgaattgcaagtatatataagccgatgtccatgtatcatgtcaacacattcacttc
ttctgtgcactgtcatgatcatgagcaacaagaactaccgccaagttttgaaggataagc
tctcgaaattgtttagactatctcggcctattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTTGGCACCTGGCAGTGTCAAAA 404 269 464 Antisense
CACAGTGCCTATTTTGGGTAGCCAA 625 145 530 Antisense
TAAGGACTGTCGGTGCGGGGATTGG 106 635 599 Antisense
TTCTTGGTTGTCAGTTCAGCCCATG 513 687 625 Antisense
CGCATTTCTCGGTGTCCATACAATG 70 255 651 Antisense
CGATCCCATATGTCAGTGCAAACCT 422 247 694 Antisense
GCAATGCAAATGGTCTGCCCGTGTG 222 321 751 Antisense
TGCCCGTGTGTTTTCATTTTTGTAG 214 585 766 Antisense
TAAGCCGATGTCCATGTATCATGTC 234 635 845 Antisense
CTTCTTCTGTGCACTGTCATGATCA 569 221 880 Antisense
GTTTAGACTATCTCGGCCTATTGGA 244 445 954 Antisense
Sequence Source Affymetrix Proprietary Database