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[186569_at]

Description C40H1.6 /REP_DB=WormBase Gene ID /WP=CE00114 /TR=SW:Q03598 /GB=CAA79557.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 46      6grp_total > 70      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7069
1 2 3 4 range
A 1770.2
(-3)
P 		3496.2
(-1.5)
P 		3012.5
(-1.9)
P 		8534.4
(3)
P 		6764
B 1852.8
(-3)
P 		3094.6
(-1.8)
P 		3631.6
(-1.2)
P 		7862.5
(3)
P 		6010
C 2124.9
(-3)
P 		3071.1
(-2.2)
P 		3234.9
(-2)
P 		8839.1
(3)
P 		6714
avr 1916
(-3) 		3220.6
(-1.8) 		3293
(-1.7) 		8412
(3) 		6496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1257
1 2 3 4 5 6 range
A 3298.8
(2.2)
P 		2480
(-1.8)
P 		3459.8
(3)
P 		3290.7
(2.2)
P 		2745.1
(-0.5)
P 		2226.8
(-3)
P 		1233
B 2777
(-2.3)
P 		2689.1
(-3)
P 		2985.1
(-0.5)
P 		3404.5
(3)
P 		3287.6
(2)
P 		2743
(-2.5)
P 		715
C 2369.2
(-3)
P 		2783.2
(-0.8)
P 		2720.7
(-1.1)
P 		3484.2
(3)
P 		2643.2
(-1.5)
P 		3002.8
(0.4)
P 		1115
avr 2815
(-1.7) 		2650.8
(-3) 		3055.2
(0.3) 		3393.1
(3) 		2892
(-1.1) 		2657.5
(-2.9) 		742
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1085
1 2 3 4 range
A 644.5
(-3)
P 		758.9
(-1.9)
P 		787.5
(-1.6)
P 		1249.3
(3)
P 		605
B 590.9
(-3)
P 		764.3
(-2)
P 		841.5
(-1.6)
P 		1675.5
(3)
P 		1085
C 703.4
(-3)
P 		883
(-1.6)
P 		1127.5
(0.2)
P 		1490.4
(3)
P 		787
avr 646.3
(-3) 		802.1
(-1.9) 		918.8
(-1) 		1471.7
(3) 		825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 794
1 2 3 4 5 6 range
A 608.1
(-1.8)
P 		882
(3)
P 		753.5
(0.7)
P 		834.6
(2.2)
P 		828.4
(2.1)
P 		542.2
(-3)
P 		340
B 966.3
(-0.6)
P 		895.1
(-1.3)
P 		724.9
(-3)
P 		901.7
(-1.3)
P 		1335.7
(3)
P 		1022.9
(-0.1)
P 		611
C 878.1
(0.6)
P 		849.3
(0)
P 		692.5
(-3)
P 		700.7
(-2.8)
P 		855.3
(0.1)
P 		1005.2
(3)
P 		313
avr 817.5
(-1) 		875.5
(0.2) 		723.6
(-3) 		812.3
(-1.1) 		1006.5
(3) 		856.8
(-0.2) 		283
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7155
Sequence Type Exemplar sequence
Representative Public ID C40H1.6 NCBI
Target Description C40H1.6 /REP_DB=WormBase Gene ID /WP=CE00114 /TR=SW:Q03598 /GB=CAA79557.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066654 NCBI Caenorhabditis elegans C40H1.6 (C40H1.6) mRNA, complete cds. 11/11 None
SNAP00000000788 ENSEMBL cdna:SNAP chromosome:CEL140:III:9331412:9332099:1 11/11 None
GENEFINDER00000000798 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9331412:9332099:1 11/11 None
C40H1.6 ENSEMBL cdna:known chromosome:CEL140:III:9331412:9332151:1 gene:C40H1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9331407-9332095(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40H1.6
Entrez Gene 176313 Entrez gene
SwissProt Q03598 EMBL-EBI
WormBase CE00114 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262298_AT expressed protein at
ATGENOME1:14974_AT expressed protein at
CANINE:1583319_S_AT similar to Ufm1-conjugating enzyme 1 cfa
CANINE_2:CFA.7834.1.A1_AT similar to Ufm1-conjugating enzyme 1 cfa
CANINE_2:CFAAFFX.19750.1.S1_S_AT similar to Ufm1-conjugating enzyme 1 cfa
DROSOPHILA_2:1635551_AT dm
DROSGENOME1:154457_AT dm
HG-U133A:217797_AT ubiquitin-fold modifier conjugating enzyme 1 hs
HG-U133_PLUS_2:217797_AT ubiquitin-fold modifier conjugating enzyme 1 hs
HG-U133A_2:217797_AT ubiquitin-fold modifier conjugating enzyme 1 hs
HU35KSUBB:RC_R50840_AT ubiquitin-fold modifier conjugating enzyme 1 hs
U133_X3P:G7705480_3P_AT ubiquitin-fold modifier conjugating enzyme 1 hs
HG-U95C:65791_F_AT ubiquitin-fold modifier conjugating enzyme 1 hs
HG-U95D:75116_AT ubiquitin-fold modifier conjugating enzyme 1 hs
MU11KSUBB:W57249_S_AT ubiquitin-fold modifier conjugating enzyme 1 mm
MG-U74AV2:97807_AT ubiquitin-fold modifier conjugating enzyme 1 mm
MOE430A:1416327_AT ubiquitin-fold modifier conjugating enzyme 1 mm
MOUSE430A_2:1416327_AT ubiquitin-fold modifier conjugating enzyme 1 mm
MOUSE430_2:1416327_AT ubiquitin-fold modifier conjugating enzyme 1 mm
RG-U34B:RC_AA849740_AT Ufm1-conjugating enzyme 1 rn
RAE230A:1371758_AT Ufm1-conjugating enzyme 1 rn
RAT230_2:1371758_AT Ufm1-conjugating enzyme 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA79557 Hypothetical protein C40H1.6 [Caenorhabditis elegans] ref|NP_499055.1| C40H1.6 [Caenorhabditis elegans] sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiquitin-fold modifier-conjugating enzyme) 2.0E-94
blast CAE65236 Hypothetical protein CBG10119 [Caenorhabditis briggsae] 1.0E-88
blast XP_623505 PREDICTED: similar to CG8386-PA [Apis mellifera] 4.0E-73
Sequence
Target Sequence 
>C. ELEGANS:186569_AT
acgaggcaattatcgctgctgttcaaaacaacaaagattgcgatcgggattggttccaac
tggaatccaatgaacgaggcaccaaatggttcggaaaatgttggtacttccataacatgg
tcaagtacgagtttgacgttgaattcgatattccaatcacgtacccagtcacggcaccag
aaatcgctcttcctgagttagatggaaagactgcaaaaatgtaccgcggtggaaaaatct
gtctctcggaacatttcaagcctctttgggctcgcaatactccaaagttcggaatcgctc
acgctttcgctctcggattgggaccatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGGCAATTATCGCTGCTGTTCA 491 93 116 Antisense
GATTGCGATCGGGATTGGTTCCAAC 408 433 151 Antisense
TCGATATTCCAATCACGTACCCAGT 664 601 260 Antisense
CACCAGAAATCGCTCTTCCTGAGTT 93 201 290 Antisense
GACTGCAAAAATGTACCGCGGTGGA 478 373 324 Antisense
GCGGTGGAAAAATCTGTCTCTCGGA 280 285 341 Antisense
GTCTCTCGGAACATTTCAAGCCTCT 328 471 356 Antisense
TTTCAAGCCTCTTTGGGCTCGCAAT 636 671 369 Antisense
GGCTCGCAATACTCCAAAGTTCGGA 696 537 384 Antisense
CAAAGTTCGGAATCGCTCACGCTTT 233 193 398 Antisense
TTCGCTCTCGGATTGGGACCATGGA 685 695 421 Antisense
Sequence Source Affymetrix Proprietary Database