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[186568_s_at]

Description Y102A5C.13 /REP_DB=WormBase Gene ID /WP=CE20385 /TR=Q9XX78 /GB=CAA20957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 53.5
(3)
A 		33.4
(-3)
A 		49.9
(1.9)
A 		51.7
(2.5)
A 		20
B 91.4
(3)
P 		39.5
(-3)
A 		89.8
(2.8)
A 		61.8
(-0.4)
A 		52
C 90.1
(2.6)
A 		89.2
(2.5)
A 		41.3
(-3)
A 		93.8
(3)
A 		53
avr 78.3
(3) 		54
(-3) 		60.3
(-1.4) 		69.1
(0.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 79.1
(-2.5)
A 		84.9
(-1.9)
P 		109
(0.5)
P 		74.1
(-3)
P 		87.9
(-1.6)
P 		133.9
(3)
P 		60
B 61.1
(0.9)
A 		47.1
(-1.4)
A 		57.7
(0.3)
A 		74.6
(3)
M 		65.7
(1.6)
P 		36.9
(-3)
P 		38
C 51.9
(-2.9)
M 		67.7
(-1.1)
P 		50.8
(-3)
A 		104.9
(3)
P 		97.8
(2.2)
P 		53
(-2.8)
P 		54
avr 64
(-3) 		66.6
(-2.2) 		72.5
(-0.5) 		84.5
(3) 		83.8
(2.8) 		74.6
(0.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.5
(3)
A 		7.3
(-3)
A 		13
(-0.2)
A 		7.6
(-2.9)
A 		12
B 29.1
(3)
P 		9.8
(-3)
A 		20.8
(0.4)
A 		13.2
(-1.9)
A 		19
C 29.8
(3)
A 		25.6
(1.4)
A 		14.4
(-3)
A 		15.8
(-2.5)
A 		15
avr 26.1
(3) 		14.2
(-2.1) 		16.1
(-1.3) 		12.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14.6
(-3)
A 		30.2
(2.2)
P 		23.7
(0)
P 		18.8
(-1.6)
P 		26.5
(1)
P 		32.6
(3)
P 		18
B 21.3
(0.5)
A 		15.7
(-2.1)
A 		14
(-2.9)
A 		19.8
(-0.2)
M 		26.7
(3)
P 		13.8
(-3)
P 		13
C 19.2
(-1)
M 		20.7
(-0.5)
P 		12.9
(-3)
A 		21.1
(-0.4)
P 		31.7
(3)
P 		17.7
(-1.5)
P 		19
avr 18.4
(-2.2) 		22.2
(-0.2) 		16.9
(-3) 		19.9
(-1.4) 		28.3
(3) 		21.4
(-0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186568_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14017
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.13 NCBI
Target Description Y102A5C.13 /REP_DB=WormBase Gene ID /WP=CE20385 /TR=Q9XX78 /GB=CAA20957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074883 NCBI Caenorhabditis elegans Y102A5C.13 (Y102A5C.13) mRNA, complete cds. 11/11 None
SNAP00000003150 ENSEMBL cdna:SNAP chromosome:CEL140:V:16942075:16942724:1 10/11 None
SNAP00000003154 ENSEMBL cdna:SNAP chromosome:CEL140:V:16949736:16950461:-1 11/11 None
GENEFINDER00000003181 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16941609:16942724:1 11/11 None
GENEFINDER00000003186 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16949736:16950689:-1 11/11 None
Y102A5C.9 ENSEMBL cdna:known chromosome:CEL140:V:16941609:16942724:1 gene:Y102A5C.9 11/11 None
Y102A5C.13 ENSEMBL cdna:known chromosome:CEL140:V:16949736:16950528:-1 gene:Y102A5C.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074880 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16941769-16942724(+) 100.0 100.0
chrV:16949735-16950528(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.9
Y102A5C.13
Entrez Gene 190837 Entrez gene
SwissProt Q9XX78 EMBL-EBI
WormBase CE20385 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20957 Hypothetical protein Y102A5C.13 [Caenorhabditis elegans] ref|NP_507284.1| Y102A5C.13 [Caenorhabditis elegans] 1.0E-129
blast CAA20957 Hypothetical protein Y102A5C.13 [Caenorhabditis elegans] ref|NP_507284.1| Y102A5C.13 [Caenorhabditis elegans] 1.0E-125
blast CAA20957 Hypothetical protein Y102A5C.13 [Caenorhabditis elegans] ref|NP_507284.1| Y102A5C.13 [Caenorhabditis elegans] 1.0E-122
blast CAA20957 Hypothetical protein Y102A5C.13 [Caenorhabditis elegans] ref|NP_507284.1| Y102A5C.13 [Caenorhabditis elegans] 1.0E-110
blast CAA20957 Hypothetical protein Y102A5C.13 [Caenorhabditis elegans] ref|NP_507284.1| Y102A5C.13 [Caenorhabditis elegans] 2.0E-93
blast CAA20946 Hypothetical protein Y102A5C.9 [Caenorhabditis elegans] ref|NP_507281.2| Y102A5C.9 [Caenorhabditis elegans] 9.0E-79
blast CAA20947 Hypothetical protein Y102A5C.14 [Caenorhabditis elegans] ref|NP_507285.1| Y102A5C.14 [Caenorhabditis elegans] 6.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-53
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0012
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-53
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-53
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.0E-48
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-53
Sequence
Target Sequence 
>C. ELEGANS:186568_S_AT
gattcactcctggggtgtttatcagtgttgatgaagaattcggaacttcagttggattca
ttggatatcatagtttaccacaatcataacacaatagttaagtggttcgaagaactagtc
caatcgaaaaatcagactcactgcaaacatgtccaactggtggcacctggagttcagcgt
atgttatctttcttgtcccatttcaaacctgaatttctcgaaacaatcattattgcacaa
aatggagtggagaattcgggagaaatttgtaaattcattgatatagttgaatcggaacaa
tggaaacgagcgaaatcgatttatgtctattcaataatctcctccaattttccaattgaa
aacctcttccatctgaccgttttctgtgttccgttgggagaattggcagtttctgatgca
attaaaattagagatattcttctgaagtccgctcatttcgaatatggccaaatcgatgtg
aaggaaaacattccgcaggaggttgtgagagtttttgttccagaattcaatgatgaaatc
cctcgctatcgttctcgtgggcttgaattcaaagtcgatcaatttcaactcacattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCACTCCTGGGGTGTTTATCAG 543 429 76 Antisense
AAACATGTCCAACTGGTGGCACCTG 533 127 220 Antisense
GTGGCACCTGGAGTTCAGCGTATGT 529 491 235 Antisense
CAGCGTATGTTATCTTTCTTGTCCC 26 203 250 Antisense
TTTCTTGTCCCATTTCAAACCTGAA 308 671 264 Antisense
AATAATCTCCTCCAATTTTCCAATT 2 173 408 Antisense
AATTGAAAACCTCTTCCATCTGACC 644 175 429 Antisense
AAGTCCGCTCATTTCGAATATGGCC 600 157 520 Antisense
AATGATGAAATCCCTCGCTATCGTT 256 165 604 Antisense
CTATCGTTCTCGTGGGCTTGAATTC 668 223 621 Antisense
GTCGATCAATTTCAACTCACATTCA 321 473 649 Antisense
Sequence Source Affymetrix Proprietary Database