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[186567_at]

Description F36H12.17 /REP_DB=WormBase Gene ID /WP=CE09987 /TR=O76721 /GB=AAC26939.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 39.2
(0.5)
A 		13.8
(-2.3)
A 		7.5
(-3)
A 		62.6
(3)
A 		55
B 52.2
(3)
A 		3.6
(-3)
A 		49.1
(2.6)
A 		51.2
(2.9)
A 		49
C 7.1
(-3)
A 		70.8
(3)
A 		30
(-0.8)
A 		67.5
(2.7)
M 		64
avr 32.8
(-2.3) 		29.4
(-2.9) 		28.9
(-3) 		60.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 63.2
(3)
A 		14.7
(-1.9)
A 		40.8
(0.7)
A 		3.5
(-3)
A 		36.7
(0.3)
A 		60.2
(2.7)
A 		60
B 45.9
(2.1)
A 		17.5
(-1.2)
A 		54.1
(3)
A 		25.9
(-0.2)
A 		28.9
(0.1)
A 		1.8
(-3)
A 		52
C 25.7
(-1.7)
A 		50.2
(1.8)
A 		28.1
(-1.3)
A 		58.8
(3)
A 		16.1
(-3)
A 		18.5
(-2.7)
A 		43
avr 44.9
(3) 		27.5
(-2.8) 		41
(1.7) 		29.4
(-2.1) 		27.2
(-2.9) 		26.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.3
(3)
A 		3
(-2.5)
A 		2
(-3)
A 		9.2
(0.5)
A 		12
B 16.6
(3)
A 		0.9
(-3)
A 		11.4
(1)
A 		10.9
(0.8)
A 		16
C 2.3
(-3)
A 		20.4
(3)
A 		10.5
(-0.3)
A 		11.4
(0)
M 		18
avr 11.1
(3) 		8.1
(-2.8) 		8
(-3) 		10.5
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.7
(1.7)
A 		5.2
(-1.1)
A 		8.9
(0.5)
A 		0.9
(-3)
A 		11.1
(1.5)
A 		14.6
(3)
A 		14
B 16
(3)
A 		5.8
(-1)
A 		13.1
(1.9)
A 		6.9
(-0.6)
A 		11.8
(1.4)
A 		0.7
(-3)
A 		15
C 9.5
(-0.4)
A 		15.3
(3)
A 		7.1
(-1.9)
A 		11.8
(0.9)
A 		5.2
(-3)
A 		6.2
(-2.4)
A 		10
avr 12.4
(3) 		8.8
(-0.7) 		9.7
(0.3) 		6.5
(-3) 		9.4
(-0.1) 		7.2
(-2.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11229
Sequence Type Exemplar sequence
Representative Public ID F36H12.17 NCBI
Target Description F36H12.17 /REP_DB=WormBase Gene ID /WP=CE09987 /TR=O76721 /GB=AAC26939.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068368 NCBI Caenorhabditis elegans F36H12.17 (F36H12.17) mRNA, complete cds. 11/11 None
SNAP00000002647 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5276597:5277756:-1 11/11 None
GENEFINDER00000002650 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5276728:5277756:-1 10/11 None
F36H12.17 ENSEMBL cdna:known chromosome:CEL140:IV:5276618:5277756:-1 gene:F36H12.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5276623-5277762(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.17
Entrez Gene 185402 Entrez gene
SwissProt O76721 EMBL-EBI
WormBase CE09987 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26939 Hypothetical protein F36H12.17 [Caenorhabditis elegans] ref|NP_500769.1| F36H12.17 [Caenorhabditis elegans] 4.0E-95
blast AAC26939 Hypothetical protein F36H12.17 [Caenorhabditis elegans] ref|NP_500769.1| F36H12.17 [Caenorhabditis elegans] 8.0E-75
blast AAC26939 Hypothetical protein F36H12.17 [Caenorhabditis elegans] ref|NP_500769.1| F36H12.17 [Caenorhabditis elegans] 1.0E-69
blast CAE72734 Hypothetical protein CBG19973 [Caenorhabditis briggsae] 9.0E-18
blast CAE72734 Hypothetical protein CBG19973 [Caenorhabditis briggsae] 1.0E-17
blast CAE72734 Hypothetical protein CBG19973 [Caenorhabditis briggsae] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:186567_AT
aattcaatgctttctatttctaatattattcacagggaatattttgggctctaagattgt
gcaattcaagttatcagcaaatgaatcaatcgttaagcaaattgattttgataaggactt
tggaaatgacacatcatcatatgcttcttcttcatacgtcctatcggttcaaacttcatc
tccactcaacatttatctctccggaagtcctgaatgccagcgaattctactggcagaaaa
ctcgggaagtattgaaatggaaattccagatgatatatggattaatgcaaacaactgcaa
taaaaccagcaagggaaaagtttacctgcatatggaaagtatcgagaaggaagcaattgg
aaacttaaagttgaatagggcttcccgaaaggctttcaaagctagaattactgataacgg
aggattcaacgatccgaatcactttttggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAATGCTTTCTATTTCTAATA 447 175 21 Antisense
CACAGGGAATATTTTGGGCTCTAAG 702 195 51 Antisense
TTGGGCTCTAAGATTGTGCAATTCA 69 693 64 Antisense
GACACATCATCATATGCTTCTTCTT 227 367 148 Antisense
TCTTCATACGTCCTATCGGTTCAAA 72 617 169 Antisense
CTATCGGTTCAAACTTCATCTCCAC 148 225 181 Antisense
TCCACTCAACATTTATCTCTCCGGA 334 589 201 Antisense
ATCTCTCCGGAAGTCCTGAATGCCA 694 31 215 Antisense
GTCCTGAATGCCAGCGAATTCTACT 376 475 227 Antisense
TGAATAGGGCTTCCCGAAAGGCTTT 276 411 392 Antisense
CAACGATCCGAATCACTTTTTGGTG 433 185 447 Antisense
Sequence Source Affymetrix Proprietary Database