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[186566_s_at]

Description F58A4.2 /REP_DB=WormBase Gene ID /WP=CE01017 /TR=SW:P34469 /GB=CAA80168.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 15      6grp_total > 97      4grp_total > 08      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 480
1 2 3 4 range
A 113.7
(-3)
P 		181.8
(-2)
P 		260.8
(-0.9)
P 		532.1
(3)
P 		418
B 121.8
(-3)
P 		140.7
(-2.7)
P 		220.8
(-1.4)
P 		503.1
(3)
P 		381
C 137.5
(-3)
M 		139.2
(-3)
P 		195
(-2.2)
P 		593.4
(3)
P 		456
avr 124.3
(-3) 		153.9
(-2.6) 		225.5
(-1.5) 		542.9
(3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1117
1 2 3 4 5 6 range
A 174.8
(-2.5)
A 		87.1
(-3)
P 		152
(-2.7)
P 		421.1
(-1.2)
P 		926.7
(1.5)
P 		1204
(3)
P 		1117
B 93.9
(-3)
P 		104.6
(-2.9)
P 		200.8
(-2.4)
P 		415.8
(-1.2)
P 		896.9
(1.5)
P 		1166.3
(3)
P 		1072
C 98.4
(-3)
P 		91.1
(-3)
M 		177.9
(-2.5)
P 		440.3
(-1.1)
P 		911.5
(1.5)
P 		1174.6
(3)
P 		1084
avr 122.4
(-2.8) 		94.3
(-3) 		176.9
(-2.5) 		425.7
(-1.2) 		911.7
(1.5) 		1181.6
(3) 		1087
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 41.4
(-2.7)
P 		39.5
(-3)
P 		68.2
(1.5)
P 		77.9
(3)
P 		38
B 38.8
(-2.7)
P 		34.8
(-3)
P 		51.2
(-1.6)
P 		107.2
(3)
P 		72
C 45.5
(-2.5)
M 		40
(-3)
P 		68
(-0.2)
P 		100.1
(3)
P 		60
avr 41.9
(-2.6) 		38.1
(-3) 		62.5
(-0.4) 		95.1
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 32.2
(-3)
A 		31
(-3)
P 		33.1
(-3)
P 		106.8
(-1.3)
P 		279.6
(2.7)
P 		293.1
(3)
P 		262
B 32.7
(-3)
P 		34.8
(-3)
P 		48.8
(-2.8)
P 		110.1
(-1.8)
P 		364.4
(1.9)
P 		434.9
(3)
P 		402
C 36.5
(-2.9)
P 		27.8
(-3)
M 		45.3
(-2.7)
P 		88.6
(-2)
P 		294.9
(1.4)
P 		393.2
(3)
P 		365
avr 33.8
(-3) 		31.2
(-3) 		42.4
(-2.8) 		101.8
(-1.8) 		313
(1.9) 		373.7
(3) 		343
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186566_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6630
Sequence Type Exemplar sequence
Representative Public ID F58A4.2 NCBI
Target Description F58A4.2 /REP_DB=WormBase Gene ID /WP=CE01017 /TR=SW:P34469 /GB=CAA80168.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066723 NCBI Caenorhabditis elegans F58A4.2 (F58A4.2) mRNA, complete cds. 11/11 None
SNAP00000012187 ENSEMBL cdna:SNAP chromosome:CEL140:III:9599378:9600640:-1 11/11 None
GENEFINDER00000012203 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9600011:9601791:-1 11/11 None
F58A4.2 ENSEMBL cdna:known chromosome:CEL140:III:9600011:9600640:-1 gene:F58A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9600006-9600636(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58A4.2
Entrez Gene 176356 Entrez gene
SwissProt P34469 EMBL-EBI
WormBase CE01017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80168 Hypothetical protein F58A4.2 [Caenorhabditis elegans] ref|NP_499124.1| F58A4.2 [Caenorhabditis elegans] sp|P34469|YMH2_CAEEL Hypothetical protein F58A4.2 in chromosome III 1.0E-74
blast CAA80168 Hypothetical protein F58A4.2 [Caenorhabditis elegans] ref|NP_499124.1| F58A4.2 [Caenorhabditis elegans] sp|P34469|YMH2_CAEEL Hypothetical protein F58A4.2 in chromosome III 4.0E-74
blast CAA80168 Hypothetical protein F58A4.2 [Caenorhabditis elegans] ref|NP_499124.1| F58A4.2 [Caenorhabditis elegans] sp|P34469|YMH2_CAEEL Hypothetical protein F58A4.2 in chromosome III 2.0E-73
blast CAA79547 Hypothetical protein C38C10.3 [Caenorhabditis elegans] ref|NP_499063.1| C38C10.3 [Caenorhabditis elegans] sp|Q03568|YLD3_CAEEL Hypothetical protein C38C10.3 in chromosome III 6.0E-41
blast CAE65158 Hypothetical protein CBG10026 [Caenorhabditis briggsae] 3.0E-40
blast CAE65158 Hypothetical protein CBG10026 [Caenorhabditis briggsae] 8.0E-40
blast CAE65158 Hypothetical protein CBG10026 [Caenorhabditis briggsae] 9.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR007465 EMBL-EBI Protein of unknown function DUF508 2.2E-72
Sequence
Target Sequence 
>C. ELEGANS:186566_S_AT
tctcgcttgttacgtcgggcaacaaagagaagaagaagaaaaggtcatcggctggcctga
ccggccacgctccgccagcggcggattcgtcgtttttctcggaagccgattcttcaatta
tgaatgtcactagtattacgcttccaacagttagcggccgcgatgactcaattcagtcta
cttctccggtacttggatactcgccattcgggtttgtcgaacgcaaaaatcgagccgcat
cgttcgatttctgtttatcggataaacctcagagtgatgtcgttgtccatcgccgaagcc
tccaaccatccacaccaacaccaaatcagtccgctgagagttcattcattgaaaatattt
tcgattcccctggccaacggaaccgccttcattcgatgatcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGCTTGTTACGTCGGGCAACAA 444 609 29 Antisense
AAAAGGTCATCGGCTGGCCTGACCG 95 133 67 Antisense
TTCGTCGTTTTTCTCGGAAGCCGAT 64 235 114 Antisense
GTCACTAGTATTACGCTTCCAACAG 95 465 154 Antisense
GACTCAATTCAGTCTACTTCTCCGG 321 373 193 Antisense
TTCTCCGGTACTTGGATACTCGCCA 97 689 210 Antisense
TACTCGCCATTCGGGTTTGTCGAAC 91 637 226 Antisense
AGCCGCATCGTTCGATTTCTGTTTA 77 83 261 Antisense
AACCTCAGAGTGATGTCGTTGTCCA 252 147 293 Antisense
ATCAGTCCGCTGAGAGTTCATTCAT 561 29 353 Antisense
AACCGCCTTCATTCGATGATCGAAG 619 145 409 Antisense
Sequence Source Affymetrix Proprietary Database