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[186565_s_at]

Description Y102A5C.12 /REP_DB=WormBase Gene ID /WP=CE20384 /TR=Q9XX79 /GB=CAA20956.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(-3)
A 		5.4
(2.1)
A 		2.2
(-1.8)
A 		6.1
(3)
A 		5
B 2.8
(0)
A 		2.3
(-3)
A 		2.4
(-2.4)
A 		3.3
(3)
A 		1
C 2
(-3)
A 		2.3
(-2.7)
A 		2.7
(-2.3)
A 		7.9
(3)
A 		6
avr 2
(-3) 		3.3
(-0.9) 		2.4
(-2.4) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.6
(-2.7)
A 		3.9
(-2.6)
A 		5.8
(-2.3)
A 		1.3
(-3)
A 		2.4
(-2.8)
A 		42.5
(3)
A 		41
B 0.9
(-3)
A 		1.2
(-2.4)
A 		3.9
(3)
A 		2.2
(-0.4)
A 		2.5
(0.2)
A 		1.3
(-2.2)
A 		3
C 1.2
(-3)
A 		1.4
(-2.6)
A 		2.6
(-0.2)
A 		4.2
(3)
A 		1.5
(-2.4)
A 		3.4
(1.4)
A 		3
avr 1.9
(-3) 		2.2
(-2.9) 		4.1
(-2) 		2.6
(-2.7) 		2.1
(-2.9) 		15.7
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(-3)
A 		1.2
(3)
A 		0.6
(-1.5)
A 		0.9
(0.8)
A 		1
B 0.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-1)
A 		0
C 0.6
(-3)
A 		0.6
(-3)
A 		0.9
(-0.4)
A 		1.3
(3)
A 		1
avr 0.6
(-3) 		0.8
(0) 		0.7
(-1.5) 		1
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		1.4
(-2.3)
A 		1.3
(-2.4)
A 		0.3
(-3)
A 		0.7
(-2.8)
A 		10.4
(3)
A 		10
B 0.3
(-3)
A 		0.4
(-2.1)
A 		0.9
(2.1)
A 		0.6
(-0.4)
A 		1
(3)
A 		0.5
(-1.3)
A 		1
C 0.4
(-3)
A 		0.4
(-3)
A 		0.7
(-0.4)
A 		0.9
(1.3)
A 		0.5
(-2.1)
A 		1.1
(3)
A 		1
avr 0.5
(-3) 		0.7
(-2.7) 		1
(-2.1) 		0.6
(-2.8) 		0.7
(-2.7) 		4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186565_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13908
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.12 NCBI
Target Description Y102A5C.12 /REP_DB=WormBase Gene ID /WP=CE20384 /TR=Q9XX79 /GB=CAA20956.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074881(11), NM_074882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074881 NCBI Caenorhabditis elegans Y102A5C.10 (Y102A5C.10) mRNA, complete cds. 11/11 None
NM_074882 NCBI Caenorhabditis elegans Y102A5C.12 (Y102A5C.12) mRNA, complete cds. 11/11 None
SNAP00000003151 ENSEMBL cdna:SNAP chromosome:CEL140:V:16943536:16944223:1 11/11 None
SNAP00000003153 ENSEMBL cdna:SNAP chromosome:CEL140:V:16948237:16948924:-1 11/11 None
GENEFINDER00000003189 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16943536:16944223:1 10/11 None
GENEFINDER00000003194 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16948237:16948924:-1 10/11 None
Y102A5C.10 ENSEMBL cdna:known chromosome:CEL140:V:16943536:16944542:1 gene:Y102A5C.10 11/11 None
Y102A5C.12 ENSEMBL cdna:known chromosome:CEL140:V:16948237:16948924:-1 gene:Y102A5C.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16943535-16944223(+) 100.0 100.0
chrV:16948236-16948924(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y102A5C.10
Y102A5C.12
Entrez Gene 190835 Entrez gene
190836 Entrez gene
SwissProt Q9XX80 EMBL-EBI
Q9XX79 EMBL-EBI
WormBase CE20383 Wormbase
CE20384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20956 Hypothetical protein Y102A5C.12 [Caenorhabditis elegans] ref|NP_507283.1| Y102A5C.12 [Caenorhabditis elegans] 1.0E-112
blast CAA20955 Hypothetical protein Y102A5C.10 [Caenorhabditis elegans] ref|NP_507282.1| Y102A5C.10 [Caenorhabditis elegans] 3.0E-99
blast CAA20956 Hypothetical protein Y102A5C.12 [Caenorhabditis elegans] ref|NP_507283.1| Y102A5C.12 [Caenorhabditis elegans] 3.0E-94
blast CAA20956 Hypothetical protein Y102A5C.12 [Caenorhabditis elegans] ref|NP_507283.1| Y102A5C.12 [Caenorhabditis elegans] 2.0E-88
blast CAA20955 Hypothetical protein Y102A5C.10 [Caenorhabditis elegans] ref|NP_507282.1| Y102A5C.10 [Caenorhabditis elegans] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.8E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.6E-11
Sequence
Target Sequence 
>C. ELEGANS:186565_S_AT
atgtcggccgctttatgcgaaaatgagctatccatccgaacatgcattttgtatgaggcc
ttggacgatataccaattgaggaatcctacaaaaacttctgcagaaaagttggaaaagac
gccatgacactttatgatttcgattattggttttatcgatttcacaacggaaatcatgat
ttgcatcatgacagaagcaaggattcgaaacaattgacgctctccgacatgccgattggc
ataatgcccgaaattttaagcaacgtggatccgattgatagattggttcttcaaaaagtg
tctaaaggccttcgccaagtggttaaggacatgaagtgggaattcgatactttgtcattt
atcaaagataacagtttactttatattcattttccttccagtggaactgtgtattattca
aaagaaaacggaggtagtgtcacgcattggacaagatctggcgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGGCCGCTTTATGCGAAAATG 701 45 13 Antisense
TATGCGAAAATGAGCTATCCATCCG 470 655 26 Antisense
GCATTTTGTATGAGGCCTTGGACGA 414 305 56 Antisense
GAGGCCTTGGACGATATACCAATTG 209 405 67 Antisense
GCTCTCCGACATGCCGATTGGCATA 14 301 231 Antisense
TGGCATAATGCCCGAAATTTTAAGC 477 545 249 Antisense
AAGTGTCTAAAGGCCTTCGCCAAGT 323 155 308 Antisense
GGCCTTCGCCAAGTGGTTAAGGACA 191 403 319 Antisense
CATTTTCCTTCCAGTGGAACTGTGT 582 213 400 Antisense
GAAAACGGAGGTAGTGTCACGCATT 427 353 436 Antisense
ACGCATTGGACAAGATCTGGCGATG 627 91 454 Antisense
Sequence Source Affymetrix Proprietary Database