[Home] | [Total List]

[186564_at]

Description F08D12.13 /REP_DB=WormBase Gene ID /WP=CE09246 /TR=P91241 /GB=AAB37936.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 5.3
(-3)
A 		7.4
(-2.4)
A 		6
(-2.8)
A 		25.2
(3)
A 		20
B 5.2
(-3)
A 		6.5
(-2.9)
A 		7.1
(-2.8)
A 		76.6
(3)
A 		71
C 5.5
(-3)
A 		10.3
(-2.8)
A 		5.5
(-3)
A 		146.6
(3)
A 		141
avr 5.3
(-3) 		8.1
(-2.8) 		6.2
(-2.9) 		82.8
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 6.9
(3)
A 		5.8
(1.1)
A 		4.7
(-0.8)
A 		4.5
(-1.1)
A 		4.4
(-1.3)
A 		3.4
(-3)
A 		4
B 5.5
(0.2)
A 		5.8
(0.7)
A 		7.4
(3)
A 		4.5
(-1.2)
A 		3.6
(-2.6)
A 		3.3
(-3)
A 		4
C 4.4
(0.3)
A 		5.3
(2.5)
A 		5.3
(2.5)
A 		5.5
(3)
A 		4.6
(0.7)
A 		3.1
(-3)
A 		2
avr 5.6
(2.5) 		5.6
(2.5) 		5.8
(3) 		4.8
(0.6) 		4.2
(-0.8) 		3.3
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.9
(-2.1)
A 		1.6
(-3)
A 		1.6
(-3)
A 		3.7
(3)
A 		2
B 1.6
(-3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		16.3
(3)
A 		15
C 1.8
(-3)
A 		2.9
(-2.7)
A 		1.9
(-3)
A 		24.7
(3)
A 		23
avr 1.8
(-3) 		2
(-2.9) 		1.7
(-3) 		14.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.3
(-0.7)
A 		2.1
(3)
A 		1
(-2.1)
A 		1.1
(-1.6)
A 		1.3
(-0.7)
A 		0.8
(-3)
A 		1
B 1.9
(3)
A 		1.9
(3)
A 		1.8
(2.1)
A 		1.2
(-3)
A 		1.5
(-0.4)
A 		1.2
(-3)
A 		1
C 1.6
(3)
A 		1.6
(3)
A 		1.3
(0)
A 		1.1
(-2)
A 		1.5
(2)
A 		1
(-3)
A 		1
avr 1.6
(1) 		1.9
(3) 		1.4
(-0.3) 		1.1
(-2.3) 		1.4
(-0.3) 		1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4797
Sequence Type Exemplar sequence
Representative Public ID F08D12.13 NCBI
Target Description F08D12.13 /REP_DB=WormBase Gene ID /WP=CE09246 /TR=P91241 /GB=AAB37936.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061966 NCBI Caenorhabditis elegans F08D12.13 (F08D12.13) mRNA, complete cds. 11/11 None
SNAP00000023723 ENSEMBL cdna:SNAP chromosome:CEL140:II:2795085:2796025:-1 9/11 None
GENEFINDER00000023731 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2795085:2796386:-1 9/11 None
F08D12.13 ENSEMBL cdna:known chromosome:CEL140:II:2795085:2796676:-1 gene:F08D12.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023724 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2795083-2796694(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.13
Entrez Gene 184181 Entrez gene
SwissProt P91241 EMBL-EBI
WormBase CE37339 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37936 Hypothetical protein F08D12.13 [Caenorhabditis elegans] ref|NP_494367.2| F08D12.13 [Caenorhabditis elegans] 6.0E-93
blast AAB37936 Hypothetical protein F08D12.13 [Caenorhabditis elegans] ref|NP_494367.2| F08D12.13 [Caenorhabditis elegans] 7.0E-90
blast AAB37936 Hypothetical protein F08D12.13 [Caenorhabditis elegans] ref|NP_494367.2| F08D12.13 [Caenorhabditis elegans] 3.0E-77
blast CAE72427 Hypothetical protein CBG19593 [Caenorhabditis briggsae] 3.0E-65
blast CAE72427 Hypothetical protein CBG19593 [Caenorhabditis briggsae] 4.0E-62
blast CAE72427 Hypothetical protein CBG19593 [Caenorhabditis briggsae] 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:186564_AT
attcctaccggcacaggtcaacgatttcggcgtctcgctgaatggagcatcatcgatgcc
gaatttagagatggctgaatgcgatccagactacaacgtgacgatcacaccggatatgta
tggagacatgcgccaagcgatgaacgtcgctcacggtggaatggagattgacgagtcgca
agtcggcaacaacggaatgggaactccaaatttagaacgtcgtgattcgatgcagttacc
ccagtcgcccacgcagccaatgttctacatttccactgtcgagagcaccaagcacaagtt
cacagtcaccacagcgtcgtatgatcgcttccaaaacgctccaaacggccacgcgtacgg
cgaaaacggctaccaaaacggcgtgggcggtatgccacaacaatccagcggctcattcgg
tcaaatgccgagctccgggagccaacaacatgaggctctgtgcaaaacgaacagcctccc
accccagtatatgagccaacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCTACCGGCACAGGTCAACGAT 5 9 87 Antisense
TCAACGATTTCGGCGTCTCGCTGAA 262 631 104 Antisense
GATGAACGTCGCTCACGGTGGAATG 266 403 225 Antisense
GACGAGTCGCAAGTCGGCAACAACG 374 377 256 Antisense
CGTCGTGATTCGATGCAGTTACCCC 66 247 304 Antisense
GTTCTACATTTCCACTGTCGAGAGC 185 443 348 Antisense
GAGCACCAAGCACAAGTTCACAGTC 654 387 369 Antisense
AGTCACCACAGCGTCGTATGATCGC 630 61 390 Antisense
TATGATCGCTTCCAAAACGCTCCAA 331 657 406 Antisense
ACAACAATCCAGCGGCTCATTCGGT 95 113 483 Antisense
CCACCCCAGTATATGAGCCAACAAC 402 271 565 Antisense
Sequence Source Affymetrix Proprietary Database