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[186563_at]

Description T23G5.3 /REP_DB=WormBase Gene ID /WP=CE00333 /TR=SW:Q03607 /GB=CAA79571.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 54.1
(-2.2)
P 		101.4
(3)
A 		47.1
(-3)
A 		73.4
(-0.1)
A 		54
B 83.3
(3)
A 		59.7
(1.1)
A 		8.9
(-3)
A 		69
(1.8)
A 		74
C 120.3
(3)
P 		62.9
(-1.8)
A 		48.6
(-3)
A 		66
(-1.5)
P 		72
avr 85.9
(3) 		74.7
(1.7) 		34.9
(-3) 		69.5
(1.1) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 145.3
(3)
P 		66.7
(-1.5)
A 		66.2
(-1.5)
M 		39.6
(-3)
A 		68.1
(-1.4)
A 		39.4
(-3)
A 		106
B 127.8
(3)
P 		70.5
(-0.6)
P 		110.1
(1.9)
A 		53.7
(-1.6)
A 		31.7
(-3)
A 		41.7
(-2.4)
A 		96
C 103.3
(3)
P 		72.3
(0.8)
P 		69.6
(0.6)
A 		52.1
(-0.7)
A 		19.3
(-3)
A 		47.5
(-1)
A 		84
avr 125.5
(3) 		69.8
(-0.9) 		82
(-0) 		48.5
(-2.4) 		39.7
(-3) 		42.9
(-2.8) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 19.7
(1.8)
P 		22
(3)
A 		12.3
(-2.2)
A 		10.7
(-3)
A 		11
B 26.6
(3)
A 		14.7
(0.1)
A 		2.1
(-3)
A 		14.7
(0.1)
A 		25
C 39.8
(3)
P 		18.1
(-1.5)
A 		16.9
(-1.8)
A 		11.1
(-3)
P 		29
avr 28.7
(3) 		18.3
(-0.4) 		10.4
(-3) 		12.2
(-2.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 26.8
(3)
P 		23.7
(1.9)
A 		14.4
(-1.3)
M 		10
(-2.9)
A 		20.6
(0.8)
A 		9.6
(-3)
A 		17
B 44.5
(3)
P 		23.5
(-1)
P 		26.7
(-0.4)
A 		14.2
(-2.8)
A 		12.9
(-3)
A 		15.6
(-2.5)
A 		32
C 38.3
(3)
P 		22.1
(-0)
P 		17.7
(-0.9)
A 		10.5
(-2.2)
A 		6.2
(-3)
A 		15.9
(-1.2)
A 		32
avr 36.5
(3) 		23.1
(-0.2) 		19.6
(-1.1) 		11.6
(-3) 		13.2
(-2.6) 		13.7
(-2.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7639
Sequence Type Exemplar sequence
Representative Public ID T23G5.3 NCBI
Target Description T23G5.3 /REP_DB=WormBase Gene ID /WP=CE00333 /TR=SW:Q03607 /GB=CAA79571.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066639 NCBI Caenorhabditis elegans T23G5.3 (T23G5.3) mRNA, complete cds. 11/11 None
SNAP00000022697 ENSEMBL cdna:SNAP chromosome:CEL140:III:9229138:9230063:-1 11/11 None
GENEFINDER00000022705 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9229138:9231113:-1 11/11 None
T23G5.3 ENSEMBL cdna:known chromosome:CEL140:III:9229138:9231113:-1 gene:T23G5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9229133-9229895(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G5.3
Entrez Gene 188816 Entrez gene
SwissProt Q03607 EMBL-EBI
WormBase CE37793 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79571 Hypothetical protein T23G5.3 [Caenorhabditis elegans] ref|NP_499040.2| T23G5.3 [Caenorhabditis elegans] sp|Q03607|YN03_CAEEL Hypothetical protein T23G5.3 in chromosome III 1.0E-137
blast CAE65262 Hypothetical protein CBG10153 [Caenorhabditis briggsae] 1.0E-120
blast CAA79571 Hypothetical protein T23G5.3 [Caenorhabditis elegans] ref|NP_499040.2| T23G5.3 [Caenorhabditis elegans] sp|Q03607|YN03_CAEEL Hypothetical protein T23G5.3 in chromosome III 1.0E-111
blast CAE65262 Hypothetical protein CBG10153 [Caenorhabditis briggsae] 5.0E-94
blast CAF97310 unnamed protein product [Tetraodon nigroviridis] 4.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 7.7E-11
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 4.3E-15
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.0E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 7.7E-11
Sequence
Target Sequence 
>C. ELEGANS:186563_AT
gaatatcagcttatgcgaatcttacgtgaagcggtgtaagttcggaacaaatcagaatat
tgcaaaaagtataaatcattatagatttttcaaaattggaccacttcgaaacatgataga
acataagctgcgaacattttgtacttgcccacctgaacttccatcaactccaataccgaa
ccaaatcttgacccaaaaagaaaatgttccgattgtcccacgtaatcttcttctttcgaa
accacctccacctccaccaccaccacttccgtcattgatgcagccgaaggatactgtaca
aattccgatgagaaaacctccaactggcagaaattccaaaaaaattaaaacgtctgcaga
ttcgattagtcttccaaggaactttacacatattgcacatgttggttggaatggtgcatc
ggtactttttgataagaaaatgactgatgatccgactgtgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCAGCTTATGCGAATCTTAC 319 325 39 Antisense
AAATTGGACCACTTCGAAACATGAT 392 113 131 Antisense
TGCGAACATTTTGTACTTGCCCACC 448 583 167 Antisense
TTCCATCAACTCCAATACCGAACCA 702 695 197 Antisense
AAGAAAATGTTCCGATTGTCCCACG 173 153 236 Antisense
TAATCTTCTTCTTTCGAAACCACCT 498 635 261 Antisense
ACTTCCGTCATTGATGCAGCCGAAG 469 103 303 Antisense
AAACCTCCAACTGGCAGAAATTCCA 606 125 352 Antisense
ACGTCTGCAGATTCGATTAGTCTTC 296 95 388 Antisense
GGAATGGTGCATCGGTACTTTTTGA 235 533 446 Antisense
AATGACTGATGATCCGACTGTGAGG 354 165 477 Antisense
Sequence Source Affymetrix Proprietary Database