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[186562_s_at]

Description Y45F10B.13 /REP_DB=WormBase Gene ID /WP=CE25289 /TR=O62465 /GB=CAA16360.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 456.6
(-2.3)
P 		744.2
(3)
P 		507.7
(-1.4)
P 		421.1
(-3)
P 		323
B 537.8
(0.4)
P 		717.5
(3)
P 		672.9
(2.4)
P 		303.9
(-3)
P 		414
C 587.8
(0.4)
P 		770.9
(3)
P 		659.4
(1.4)
P 		351.5
(-3)
P 		419
avr 527.4
(-0.4) 		744.2
(3) 		613.3
(1) 		358.8
(-3) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 618.4
(1.8)
P 		712.9
(3)
P 		512.3
(0.4)
P 		412.3
(-0.9)
P 		284
(-2.5)
P 		244.6
(-3)
P 		468
B 587.2
(1.8)
P 		597.4
(2)
P 		672.3
(3)
P 		475.4
(0.3)
P 		269
(-2.5)
P 		230.3
(-3)
P 		442
C 590.3
(3)
P 		554.6
(2.4)
P 		559.9
(2.5)
P 		450.1
(0.7)
P 		275.5
(-2.3)
P 		230.8
(-3)
P 		360
avr 598.6
(2.6) 		621.6
(3) 		581.5
(2.4) 		445.9
(0.3) 		276.2
(-2.4) 		235.2
(-3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 166.3
(3)
P 		161.5
(2.7)
P 		132.7
(1.1)
P 		61.6
(-3)
P 		105
B 171.5
(2.7)
P 		177.2
(3)
P 		155.9
(1.9)
P 		64.8
(-3)
P 		112
C 194.6
(1.8)
P 		221.6
(2.7)
P 		229.8
(3)
P 		59.3
(-3)
P 		171
avr 177.5
(2.6) 		186.8
(3) 		172.8
(2.3) 		61.9
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 114
(-1.3)
P 		253.5
(3)
P 		111.6
(-1.4)
P 		104.6
(-1.6)
P 		85.7
(-2.2)
P 		59.6
(-3)
P 		194
B 204.3
(3)
P 		198.9
(2.7)
P 		163.3
(0.9)
P 		125.9
(-1)
P 		109.3
(-1.8)
P 		85.9
(-3)
P 		118
C 218.8
(3)
P 		169.2
(0.9)
P 		142.5
(-0.2)
P 		90.5
(-2.4)
P 		89.2
(-2.5)
P 		77.3
(-3)
P 		142
avr 179
(1.7) 		207.2
(3) 		139.1
(-0.1) 		107
(-1.5) 		94.7
(-2.1) 		74.3
(-3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186562_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10169
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.13 NCBI
Target Description Y45F10B.13 /REP_DB=WormBase Gene ID /WP=CE25289 /TR=O62465 /GB=CAA16360.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028297(9), NM_001028296(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028297 NCBI Caenorhabditis elegans Y45F10B.13b (Y45F10B.13) mRNA, complete cds. 9/11 None
NM_001028296 NCBI Caenorhabditis elegans Y45F10B.13a (Y45F10B.13) mRNA, complete cds. 9/11 None
Y45F10B.13b ENSEMBL cdna:known chromosome:CEL140:IV:13549631:13561621:-1 gene:Y45F10B.13 9/11 None
Y45F10B.13a ENSEMBL cdna:known chromosome:CEL140:IV:13549731:13561557:-1 gene:Y45F10B.13 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007850 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007863 3/11 Cross Hyb Matching Probes None
SNAP00000029683 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029688 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13549736-13561563(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y45F10B.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60772 Hypothetical protein Y45F10B.13b [Caenorhabditis elegans] emb|CAH60766.1| Hypothetical protein Y45F10B.13b [Caenorhabditis elegans] ref|NP_001023468.1| Y45F10B.13b [Caenorhabditis elegans] 0.0
blast CAB70200 Hypothetical protein Y45F10B.13a [Caenorhabditis elegans] emb|CAA16360.3| Hypothetical protein Y45F10B.13a [Caenorhabditis elegans] ref|NP_001023467.1| Y45F10B.13a [Caenorhabditis elegans] 0.0
blast CAE58587 Hypothetical protein CBG01754 [Caenorhabditis briggsae] 1.0E-154
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023468.1 2 5-27,139-158
NP_001023467.1 2 5-27,139-158
Y45F10B.13b 2 5-27,139-158
Y45F10B.13a 2 5-27,139-158
Sequence
Target Sequence 
>C. ELEGANS:186562_S_AT
aatgaggttgtcgacagggcttctgccaactcgacaccgtggagagctgcatcagttgga
ccgacgatgcggcgactggaacaagttgttagcagagttgaaggggatgatcaaaaggag
gctaactttgttttcagatcatcaccatacgcatcgcacaccgcccgtcgcagtaagacc
cctatcagaaatgcagaagccgaaggaggtgtcgagtcgattgcaagacagtggccaccg
gcaagtaatacttccgcagcagcagctggaaataatggaagagatgaatggattggaaaa
agtatgagaggagttgaagagaatgacgatggattggtgatgacgatgtgtagacgtgtt
gtcgagaaaaagaaggatgaaaattggaagtggagagatgaaagtggacgacttttggat
gagaaacataataatacttggaagggagaactagacactcttctccgtgacggaccaaac
gaaggtcgacactggagccgaactgtcgagaaaatgccaaccggtgacacacgattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGAGGTTGTCGACAGGGCTTCTG 85 165 1039 Antisense
GACACCGTGGAGAGCTGCATCAGTT 634 367 1071 Antisense
TGGACCGACGATGCGGCGACTGGAA 570 547 1095 Antisense
GGAGGCTAACTTTGTTTTCAGATCA 264 515 1155 Antisense
TCAGATCATCACCATACGCATCGCA 37 625 1172 Antisense
CGTCGCAGTAAGACCCCTATCAGAA 293 245 1204 Antisense
TCGATTGCAAGACAGTGGCCACCGG 707 601 1255 Antisense
AAGTAATACTTCCGCAGCAGCAGCT 401 157 1281 Antisense
CACTCTTCTCCGTGACGGACCAAAC 366 197 1494 Antisense
AAGGTCGACACTGGAGCCGAACTGT 496 159 1520 Antisense
TGCCAACCGGTGACACACGATTCCA 55 587 1553 Antisense
Sequence Source Affymetrix Proprietary Database