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[186561_at]

Description Y116A8C.21 /REP_DB=WormBase Gene ID /WP=CE23330 /TR=Q9U2V0 /GB=CAB55127.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 1.5
(-3)
A 		8.1
(-2.3)
A 		10.4
(-2.1)
A 		61.8
(3)
A 		60
B 17.6
(2.2)
A 		2.7
(-3)
A 		3.8
(-2.6)
A 		19.9
(3)
A 		17
C 2.5
(-3)
A 		9.6
(-1.6)
A 		18.6
(0.1)
A 		33.7
(3)
A 		31
avr 7.2
(-2.9) 		6.8
(-3) 		10.9
(-2.2) 		38.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 29.4
(1.9)
A 		12.3
(-1.3)
A 		24.4
(0.9)
A 		15.5
(-0.7)
A 		35.3
(3)
A 		3.4
(-3)
A 		32
B 16.8
(-1.2)
A 		22.3
(-0.4)
A 		48.8
(3)
A 		2.6
(-3)
A 		5.7
(-2.6)
A 		5.5
(-2.6)
A 		46
C 3.9
(-2.6)
A 		34.5
(3)
A 		1.5
(-3)
A 		14.4
(-0.7)
A 		4
(-2.5)
A 		12.9
(-0.9)
A 		33
avr 16.7
(0.2) 		23
(2.4) 		24.9
(3) 		10.8
(-1.8) 		15
(-0.4) 		7.3
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.5
(-3)
A 		1.8
(-2.1)
A 		2.7
(-1.4)
A 		9
(3)
A 		9
B 5.6
(3)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		4.3
(1.4)
A 		5
C 0.8
(-3)
A 		2.8
(-0.9)
A 		6.5
(3)
A 		5.7
(2.2)
A 		6
avr 2.3
(-2.3) 		1.8
(-3) 		3.4
(-0.9) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.4
(-0.2)
A 		4.4
(-0.8)
A 		5.3
(-0.3)
A 		3.9
(-1.1)
A 		10.7
(3)
A 		0.8
(-3)
A 		10
B 5.8
(-0.2)
A 		7.4
(0.6)
A 		11.8
(3)
A 		0.7
(-3)
A 		2.3
(-2.1)
A 		2.1
(-2.2)
A 		11
C 1.4
(-2.4)
A 		10.5
(3)
A 		0.4
(-3)
A 		2.9
(-1.5)
A 		1.3
(-2.5)
A 		4.3
(-0.7)
A 		10
avr 4.2
(-0.8) 		7.4
(3) 		5.8
(1.1) 		2.5
(-2.9) 		4.8
(-0.1) 		2.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8573
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.21 NCBI
Target Description Y116A8C.21 /REP_DB=WormBase Gene ID /WP=CE23330 /TR=Q9U2V0 /GB=CAB55127.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070620 NCBI Caenorhabditis elegans Y116A8C.21 (Y116A8C.21) mRNA, complete cds. 11/11 None
GENEFINDER00000004182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17043369:17045748:-1 11/11 None
Y116A8C.21 ENSEMBL cdna:known chromosome:CEL140:IV:17043369:17045748:-1 gene:Y116A8C.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004092 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17043374-17045754(-) 97.84 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.21
Entrez Gene 191002 Entrez gene
SwissProt Q9U2V0 EMBL-EBI
WormBase CE23330 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55127 Hypothetical protein Y116A8C.21 [Caenorhabditis elegans] ref|NP_503021.1| Y116A8C.21 [Caenorhabditis elegans] 0.0
blast CAB05192 Hypothetical protein F38C2.6 [Caenorhabditis elegans] ref|NP_502932.1| F38C2.6 [Caenorhabditis elegans] 3.0E-97
blast CAE72394 Hypothetical protein CBG19551 [Caenorhabditis briggsae] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:186561_AT
gagactgtagcgcaaacaccaacaaaacgtgccaaaactttgtttggagtgacggttata
ctactgatacggaacttttactgtcgggaattctttgggatccaggatatgatactcaac
aacaggattgtctgacagtgtacaatgcctacagtgacacaaaattgaatttgacaaaaa
aatttcgtttagcaaagctcacgagcaagagtctcatcccattaattaaaacttttggat
ttataattgctccgaatattagaaataatttcgagatttttaaatctttatattttttcc
aattttgcaacaaaaattgcaaacaccaacaaaacgtgccaatttatagaactttgtttg
gagtgacggttataccaatgggatttttatttgaaaacgtaacgtttcaaatttttgggc
ctgcgttccgaagccggtttaatatagcacttcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTGTAGCGCAAACACCAACAA 406 393 635 Antisense
GTGACGGTTATACTACTGATACGGA 620 481 683 Antisense
TGATACGGAACTTTTACTGTCGGGA 584 477 699 Antisense
ACTGTCGGGAATTCTTTGGGATCCA 575 95 714 Antisense
GGGATCCAGGATATGATACTCAACA 271 495 731 Antisense
GTCTGACAGTGTACAATGCCTACAG 624 471 764 Antisense
AGCTCACGAGCAAGAGTCTCATCCC 2 81 830 Antisense
GCAAGAGTCTCATCCCATTAATTAA 79 321 839 Antisense
TCAAATTTTTGGGCCTGCGTTCCGA 357 627 1041 Antisense
CTGCGTTCCGAAGCCGGTTTAATAT 224 1 1055 Antisense
GCCGGTTTAATATAGCACTTCATTT 34 285 1067 Antisense
Sequence Source Affymetrix Proprietary Database