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[186560_at]

Description Y116A8C.27 /REP_DB=WormBase Gene ID /WP=CE23335 /TR=Q9U2U3 /GB=CAB55134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 66      6grp_total > 52      4grp_total > 62      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 935
1 2 3 4 range
A 1568
(3)
P 		1102.6
(-0.6)
P 		1126.7
(-0.4)
P 		796
(-3)
P 		772
B 1504.7
(3)
P 		1006.6
(-0.4)
P 		1354.1
(2)
P 		633.2
(-3)
P 		872
C 1461.1
(3)
P 		1107.7
(-0.1)
P 		1281.6
(1.4)
P 		779.7
(-3)
P 		681
avr 1511.3
(3) 		1072.3
(-0.4) 		1254.1
(1) 		736.3
(-3) 		775

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 944
1 2 3 4 5 6 range
A 1222.7
(-0.8)
P 		1321.2
(0.4)
P 		1547.5
(3)
P 		1155
(-1.6)
P 		1033.6
(-3)
P 		1047.1
(-2.8)
P 		514
B 1318.2
(-1.1)
P 		1358.8
(-0.7)
P 		1807.8
(3)
P 		1516
(0.6)
P 		1088.7
(-3)
P 		1194.9
(-2.1)
P 		719
C 922.6
(-2.5)
P 		1440.6
(2.2)
P 		1523.9
(3)
P 		1379.7
(1.7)
P 		864
(-3)
P 		1398
(1.9)
P 		660
avr 1154.5
(-1.5) 		1373.5
(0.6) 		1626.4
(3) 		1350.2
(0.4) 		995.4
(-3) 		1213.3
(-0.9) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 570.9
(3)
P 		239.3
(-1.4)
P 		294.5
(-0.6)
P 		116.5
(-3)
P 		454
B 479.8
(3)
P 		248.6
(-1)
P 		313.8
(0.1)
P 		134.9
(-3)
P 		345
C 483.7
(3)
P 		318.5
(0.2)
P 		446.7
(2.4)
P 		131.5
(-3)
P 		352
avr 511.5
(3) 		268.8
(-0.8) 		351.7
(0.5) 		127.6
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 225.4
(-3)
P 		469.9
(3)
P 		337
(-0.3)
P 		292.9
(-1.3)
P 		311.9
(-0.9)
P 		254.9
(-2.3)
P 		245
B 458.7
(3)
P 		452.3
(2.3)
P 		439
(0.9)
P 		401.5
(-3)
P 		442.3
(1.3)
P 		445.6
(1.6)
P 		57
C 342
(-1)
P 		439.6
(2.1)
P 		387.9
(0.5)
P 		277.5
(-3)
P 		279.6
(-2.9)
P 		468
(3)
P 		191
avr 342
(-2.2) 		453.9
(3) 		388
(-0) 		324
(-3) 		344.6
(-2) 		389.5
(0) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8507
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.27 NCBI
Target Description Y116A8C.27 /REP_DB=WormBase Gene ID /WP=CE23335 /TR=Q9U2U3 /GB=CAB55134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070628(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070628 NCBI Caenorhabditis elegans Y116A8C.27 (Y116A8C.27) mRNA, complete cds. 11/11 None
SNAP00000004100 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17090699:17096218:-1 11/11 None
GENEFINDER00000004172 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17090699:17093480:-1 9/11 None
Y116A8C.27 ENSEMBL cdna:known chromosome:CEL140:IV:17090610:17096225:-1 gene:Y116A8C.27 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17090704-17092679(-) 83.97 91.99
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.27
Entrez Gene 191004 Entrez gene
SwissProt Q9U2U3 EMBL-EBI
WormBase CE37421 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249342_AT ATP12 protein-related at
CANINE_2:CFAAFFX.28155.1.S1_AT similar to ATP synthase mitochondrial F1 complex assembly factor 2 cfa
DROSGENOME1:153247_AT dm
DROSOPHILA_2:1624331_AT dm
CHICKEN:GGA.5421.1.S1_AT similar to ATP synthase mitochondrial F1 complex assembly factor 2 gga
CHICKEN:GGAAFFX.26358.1.S1_AT similar to ATP synthase mitochondrial F1 complex assembly factor 2 gga
HG-U133_PLUS_2:213057_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U133A_2:213057_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U133A:213057_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HU35KSUBD:RC_R38804_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
U133_X3P:HS.306254.0.S1_3P_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
U133_X3P:HS.13434.0.S1_3P_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U133A_2:214330_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U133_PLUS_2:214330_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U133A:214330_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U95AV2:38910_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
HG-U95AV2:41865_AT ATP synthase mitochondrial F1 complex assembly factor 2 hs
MG-U74BV2:117301_AT ATP synthase mitochondrial F1 complex assembly factor 2 mm
MOE430A:1426474_AT ATP synthase mitochondrial F1 complex assembly factor 2 mm
MOUSE430A_2:1426474_AT ATP synthase mitochondrial F1 complex assembly factor 2 mm
MOUSE430_2:1426474_AT ATP synthase mitochondrial F1 complex assembly factor 2 mm
RG-U34C:RC_AI177136_AT ATP synthase mitochondrial F1 complex assembly factor 2 (predicted) rn
RAE230A:1371892_AT ATP synthase mitochondrial F1 complex assembly factor 2 (predicted) rn
RAT230_2:1371892_AT ATP synthase mitochondrial F1 complex assembly factor 2 (predicted) rn
YEAST_2:1780128_AT Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase Sc
Protein Similarities
Method ID Description E-Value
blast CAB55134 Hypothetical protein Y116A8C.27 [Caenorhabditis elegans] ref|NP_503029.2| Y116A8C.27 [Caenorhabditis elegans] 1.0E-144
blast CAE57460 Hypothetical protein CBG00425 [Caenorhabditis briggsae] 1.0E-132
blast CAB55134 Hypothetical protein Y116A8C.27 [Caenorhabditis elegans] ref|NP_503029.2| Y116A8C.27 [Caenorhabditis elegans] 2.0E-86
blast CAE57460 Hypothetical protein CBG00425 [Caenorhabditis briggsae] 1.0E-80
blast EAL33149 GA21252-PA [Drosophila pseudoobscura] 7.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004172 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:186560_AT
aagctcgaaacttcatcgctaccaggaggagaaatgggctccgcttatcaagaatttgaa
taacgatttgggaattaaagttcgccccagcgagaatattttagactgtgacgtggccag
cgagaacgataaggaaaaaatcgacagatggattcgtcagcacaatttcccggctcttgt
tgggcttcagtatgcaactgaatcggtcaaatcattcgtgatcgcctacaacgcaattcg
tcatcacatcgacccagacacagcaatcgatgcagcaacactggaacagagaactcaagc
agaaacatggggaaatgttgaatgggctcacggaattgaaagagaagaactcatgacaag
actgtcggctgcttgtctttttgtctatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCGAAACTTCATCGCTACCAG 314 151 450 Antisense
AATGGGCTCCGCTTATCAAGAATTT 40 1 482 Antisense
TCGCCCCAGCGAGAATATTTTAGAC 564 599 531 Antisense
AGACTGTGACGTGGCCAGCGAGAAC 347 71 552 Antisense
GATGGATTCGTCAGCACAATTTCCC 50 407 596 Antisense
CGGCTCTTGTTGGGCTTCAGTATGC 143 243 620 Antisense
ATCATTCGTGATCGCCTACAACGCA 237 31 660 Antisense
AACGCAATTCGTCATCACATCGACC 502 145 679 Antisense
GACCCAGACACAGCAATCGATGCAG 531 381 700 Antisense
ACAAGACTGTCGGCTGCTTGTCTTT 598 113 805 Antisense
GCTGCTTGTCTTTTTGTCTATTTTA 464 297 817 Antisense
Sequence Source Affymetrix Proprietary Database