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[186559_at]

Description Y102A5C.20 /REP_DB=WormBase Gene ID /WP=CE20392 /TR=Q9XX74 /GB=CAA20961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 17      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 11.7
(-1.9)
A 		30.2
(0.4)
A 		3.2
(-3)
A 		50.6
(3)
A 		47
B 31.8
(3)
A 		6.7
(-3)
A 		15.4
(-0.9)
A 		19.6
(0.1)
A 		25
C 1
(-3)
A 		17.1
(0.3)
A 		30.3
(3)
A 		2.3
(-2.7)
A 		29
avr 14.8
(-3) 		18
(-1) 		16.3
(-2) 		24.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.9
(-2.4)
A 		26.5
(3)
A 		23.1
(2.2)
A 		17.8
(0.9)
A 		4.7
(-2.2)
A 		25
B 3.7
(-3)
A 		25.4
(3)
A 		18.4
(1.1)
A 		7.1
(-2.1)
A 		16.6
(0.6)
A 		8.3
(-1.7)
A 		22
C 11.2
(-0.6)
A 		5.7
(-3)
A 		14.6
(1)
A 		6.4
(-2.7)
A 		11
(-0.6)
A 		19.2
(3)
A 		14
avr 5.4
(-3) 		11.7
(-0.4) 		19.8
(3) 		12.2
(-0.2) 		15.1
(1) 		10.7
(-0.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.3
(0.2)
A 		6.6
(2.3)
A 		0.8
(-3)
A 		7.4
(3)
A 		7
B 10.2
(3)
A 		1.7
(-3)
A 		3.6
(-1.7)
A 		4.2
(-1.2)
A 		9
C 0.3
(-3)
A 		4.9
(-0.3)
A 		10.6
(3)
A 		0.4
(-2.9)
A 		10
avr 4.9
(2.4) 		4.4
(-0.6) 		5
(3) 		4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1.4
(-1.7)
A 		5.8
(2.9)
A 		5.9
(3)
A 		5.4
(2.5)
A 		1.1
(-2.1)
A 		6
B 1.3
(-3)
A 		8.5
(3)
A 		4.5
(-0.3)
A 		1.9
(-2.5)
A 		6.7
(1.5)
A 		3.1
(-1.5)
A 		7
C 4.2
(0.4)
A 		1.7
(-2.5)
A 		3.7
(-0.2)
A 		1.3
(-3)
A 		3.5
(-0.4)
A 		6.4
(3)
A 		5
avr 1.9
(-3) 		3.9
(0.6) 		4.7
(2.1) 		3
(-1) 		5.2
(3) 		3.5
(-0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12748
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.20 NCBI
Target Description Y102A5C.20 /REP_DB=WormBase Gene ID /WP=CE20392 /TR=Q9XX74 /GB=CAA20961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y102A5C.20 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16971617:16973543:1 gene:Y102A5C.20 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16971998-16973187(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y102A5C.20
Sequence
Target Sequence 
>C. ELEGANS:186559_AT
attctttttcctgatggcttgttgaatcaatttcttatgtttggattatgcgagaactct
ataaatacacagttagagtgtgaacgcttttattgtgcaatcaacagcttttactatttt
tactggctcttgcacgagcaatctgtttgtctttcaaacgtggtgttttctataattatt
tccattcgaattctcatttgcaattattgtttaaacacgccaacaagtaaaaagctgtct
aaagctactcgcattgctcttctcgacgcaataattgtcttattctttaatatcctgact
tcatacatttttgttcactttcctagtgttgactttgagtcaattggaccgttggcaaca
gttacgaaaacatttggattagtgattgaaggactgataacttgccgtgtgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTTTTCCTGATGGCTTGTTGA 610 9 22 Antisense
GTGTGAACGCTTTTATTGTGCAATC 37 489 99 Antisense
TACTATTTTTACTGGCTCTTGCACG 546 643 133 Antisense
GCACGAGCAATCTGTTTGTCTTTCA 547 313 153 Antisense
ATTTCCATTCGAATTCTCATTTGCA 519 17 199 Antisense
TAAAGCTACTCGCATTGCTCTTCTC 129 641 261 Antisense
TGCTCTTCTCGACGCAATAATTGTC 450 579 276 Antisense
TATTCTTTAATATCCTGACTTCATA 591 661 302 Antisense
ATACATTTTTGTTCACTTTCCTAGT 7 25 324 Antisense
GAGTCAATTGGACCGTTGGCAACAG 70 399 358 Antisense
GGACTGATAACTTGCCGTGTGTTGT 245 525 412 Antisense
Sequence Source Affymetrix Proprietary Database