[Home] | [Total List]

[186557_at]

Description F15G9.2 /REP_DB=WormBase Gene ID /WP=CE01550 /TR=SW:Q10034 /GB=CAA87332.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 2.5
(-3)
A 		32.6
(-0.4)
A 		39.4
(0.2)
A 		71.8
(3)
A 		69
B 11.8
(-3)
A 		28.8
(3)
A 		16.3
(-1.4)
A 		14.6
(-2)
A 		17
C 27.6
(-1.7)
A 		18.5
(-3)
A 		34.9
(-0.7)
A 		61.2
(3)
A 		43
avr 14
(-3) 		26.6
(-0.9) 		30.2
(-0.2) 		49.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 38.5
(3)
A 		9.1
(-1.8)
A 		14
(-1)
A 		3
(-2.8)
A 		16.8
(-0.5)
A 		1.8
(-3)
A 		37
B 17.6
(-0.1)
A 		3.2
(-2.9)
A 		2.5
(-3)
A 		6.6
(-2.2)
A 		24
(1.1)
A 		33.9
(3)
A 		31
C 38.4
(-0.5)
A 		30.2
(-1.1)
A 		41.9
(-0.2)
A 		81.8
(3)
A 		15.1
(-2.3)
A 		6.9
(-3)
A 		75
avr 31.5
(3) 		14.2
(-3) 		19.5
(-1.2) 		30.5
(2.7) 		18.6
(-1.5) 		14.2
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-3)
A 		7.1
(0.9)
A 		10.3
(2.9)
A 		10.5
(3)
A 		10
B 3.8
(-2)
A 		7.1
(3)
A 		3.8
(-2)
A 		3.1
(-3)
A 		4
C 9.1
(0.4)
A 		5.3
(-3)
A 		12.1
(3)
A 		10.3
(1.4)
A 		7
avr 4.6
(-3) 		6.5
(-0.2) 		8.7
(3) 		8
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.1
(3)
A 		3.2
(-0.5)
A 		3
(-0.7)
A 		0.8
(-2.6)
A 		5.1
(1.2)
A 		0.4
(-3)
A 		7
B 6.1
(-0.3)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		1.7
(-2.5)
A 		9.8
(1.6)
A 		12.6
(3)
A 		12
C 14.2
(2.1)
A 		9.2
(-0.1)
A 		10.7
(0.6)
A 		16.4
(3)
A 		4.9
(-1.9)
A 		2.3
(-3)
A 		14
avr 9.1
(3) 		4.5
(-3) 		4.8
(-2.6) 		6.3
(-0.7) 		6.6
(-0.3) 		5.1
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17006
Sequence Type Exemplar sequence
Representative Public ID F15G9.2 NCBI
Target Description F15G9.2 /REP_DB=WormBase Gene ID /WP=CE01550 /TR=SW:Q10034 /GB=CAA87332.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077233 NCBI Caenorhabditis elegans F15G9.2 (F15G9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000012500 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9710161:9713644:-1 9/11 None
F15G9.2 ENSEMBL cdna:known chromosome:CEL140:X:9713081:9713644:-1 gene:F15G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9713080-9713644(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15G9.2
Entrez Gene 184544 Entrez gene
SwissProt Q10034 EMBL-EBI
WormBase CE01550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87332 Hypothetical protein F15G9.2 [Caenorhabditis elegans] ref|NP_509634.1| F15G9.2 [Caenorhabditis elegans] sp|Q10034|YSI2_CAEEL Hypothetical protein F15G9.2 in chromosome X 6.0E-83
blast CAA87332 Hypothetical protein F15G9.2 [Caenorhabditis elegans] ref|NP_509634.1| F15G9.2 [Caenorhabditis elegans] sp|Q10034|YSI2_CAEEL Hypothetical protein F15G9.2 in chromosome X 1.0E-61
blast CAA87333 Hypothetical protein F15G9.3 [Caenorhabditis elegans] ref|NP_509633.1| F15G9.3 [Caenorhabditis elegans] sp|Q10035|YSI3_CAEEL Hypothetical protein F15G9.3 in chromosome X 1.0E-48
blast CAE69765 Hypothetical protein CBG16046 [Caenorhabditis briggsae] 7.0E-42
blast CAE69765 Hypothetical protein CBG16046 [Caenorhabditis briggsae] 8.0E-40
Sequence
Target Sequence 
>C. ELEGANS:186557_AT
ggacttctcgaattcgcttttcaacctttcaaaaattgaagattctgataatgatactta
tcgaaattcagattgtttaagtgaacgcttcaagaaaatatcaaaaactcgaagcatcaa
gtggtcgtccgaaagtgatttgacaaagatgtgttcatatgacgttgccgttgaaacaat
gagaagaaactcgcttgaagaggtgagtttttcaaacaattcttatttcattttactacg
acaggtctcgcaatgcatgcaagaccggctcaatgcaggaactgaaaacatacttgagac
tggcgaagtttcagatgaaaattcactcaaaaaaaaaacatttttgatgaacatgtttcg
aacagcagttttaaaagtgatgaccgatccatctgggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTTCTCGAATTCGCTTTTCAAC 460 523 15 Antisense
ACTCGAAGCATCAAGTGGTCGTCCG 249 99 121 Antisense
GTGGTCGTCCGAAAGTGATTTGACA 78 489 135 Antisense
GATGTGTTCATATGACGTTGCCGTT 227 409 162 Antisense
ATTTCATTTTACTACGACAGGTCTC 404 15 239 Antisense
ACGACAGGTCTCGCAATGCATGCAA 679 91 252 Antisense
GCAATGCATGCAAGACCGGCTCAAT 398 321 264 Antisense
AGACCGGCTCAATGCAGGAACTGAA 12 71 276 Antisense
TGAAAACATACTTGAGACTGGCGAA 538 571 297 Antisense
GAACATGTTTCGAACAGCAGTTTTA 488 351 363 Antisense
AGTGATGACCGATCCATCTGGGAAT 576 57 390 Antisense
Sequence Source Affymetrix Proprietary Database