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[186556_at]

Description F43C11.12 /REP_DB=WormBase Gene ID /WP=CE23719 /TR=Q9U5B1 /GB=AAF16614.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 10.4
(-3)
A 		48.6
(2.2)
A 		54.7
(3)
A 		14.2
(-2.5)
A 		44
B 16.1
(-1.8)
A 		28.3
(2.7)
A 		12.9
(-3)
A 		29.1
(3)
A 		16
C 6.6
(-3)
A 		31.8
(0.8)
A 		46.9
(3)
A 		15.9
(-1.6)
A 		40
avr 11
(-3) 		36.2
(2.6) 		38.2
(3) 		19.7
(-1.1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 47.6
(3)
A 		10.1
(-2.6)
A 		13.1
(-2.1)
A 		17.4
(-1.5)
A 		15.6
(-1.8)
A 		7.2
(-3)
A 		40
B 40.9
(3)
A 		13.7
(-1.6)
A 		7.6
(-2.6)
A 		28.6
(0.9)
A 		5.5
(-3)
A 		5.6
(-3)
A 		35
C 7.2
(-3)
A 		42.9
(-0.1)
A 		18.8
(-2)
A 		80
(3)
A 		8.5
(-2.9)
A 		10
(-2.8)
A 		73
avr 31.9
(1.2) 		22.2
(-0.5) 		13.2
(-2) 		42
(3) 		9.9
(-2.6) 		7.6
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.8
(-2.2)
A 		10.5
(1.1)
A 		14.3
(3)
A 		2.1
(-3)
A 		12
B 5.1
(0.1)
A 		7
(3)
A 		3
(-3)
A 		6.2
(1.8)
A 		4
C 2.2
(-3)
A 		9.2
(-0)
A 		16.3
(3)
A 		2.7
(-2.8)
A 		14
avr 3.7
(-3) 		8.9
(1.2) 		11.2
(3) 		3.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.8
(3)
A 		3.6
(-1.4)
A 		2.9
(-2)
A 		4.4
(-0.7)
A 		4.7
(-0.5)
A 		1.7
(-3)
A 		7
B 14.2
(3)
A 		4.6
(-1.7)
A 		1.9
(-3)
A 		7.6
(-0.2)
A 		2.2
(-2.9)
A 		2.1
(-2.9)
A 		12
C 2.7
(-3)
A 		13.1
(1.7)
A 		4.8
(-2.1)
A 		16.1
(3)
A 		2.8
(-3)
A 		3.3
(-2.7)
A 		13
avr 8.6
(2.3) 		7.1
(1) 		3.2
(-2.3) 		9.4
(3) 		3.2
(-2.3) 		2.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5977
Sequence Type Exemplar sequence
Representative Public ID F43C11.12 NCBI
Target Description F43C11.12 /REP_DB=WormBase Gene ID /WP=CE23719 /TR=Q9U5B1 /GB=AAF16614.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061854(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061854 NCBI Caenorhabditis elegans F43C11.12 (F43C11.12) mRNA, complete cds. 9/11 None
SNAP00000013003 ENSEMBL cdna:SNAP chromosome:CEL140:II:2365670:2366721:-1 10/11 None
F43C11.12 ENSEMBL cdna:known chromosome:CEL140:II:2365670:2366064:-1 gene:F43C11.12 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2365652-2366269(-) 85.79 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.12
Entrez Gene 185703 Entrez gene
SwissProt Q9U5B1 EMBL-EBI
WormBase CE36847 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16614 Hypothetical protein F43C11.12 [Caenorhabditis elegans] ref|NP_494255.2| F43C11.12 [Caenorhabditis elegans] 8.0E-55
blast AAF16614 Hypothetical protein F43C11.12 [Caenorhabditis elegans] ref|NP_494255.2| F43C11.12 [Caenorhabditis elegans] 1.0E-54
blast AAC26274 Hypothetical protein F16G10.6 [Caenorhabditis elegans] ref|NP_494260.2| F16G10.6 [Caenorhabditis elegans] 2.0E-43
blast AAC26274 Hypothetical protein F16G10.6 [Caenorhabditis elegans] ref|NP_494260.2| F16G10.6 [Caenorhabditis elegans] 7.0E-28
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 2.0E-22
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 5.2E-52
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.7E-39
Sequence
Target Sequence 
>C. ELEGANS:186556_AT
tctccccaaaatctcctgcggaatacattgagaaagacggatgcttcatgctaacctgcc
ccgaaaatacatatccatcgttcttcagtcaatttcaatacagcgaaatccctccacctg
gtaacttgattcctcagaatgcactggagatcagtcctccaacctcactggaagaaatgg
gtggtgccagcctatctgagtactttgggatcatatgtgatgacggtgtttggaaactta
ccaaatatccaaatggaattacattcaacaaagatccacctagttacacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCCAAAATCTCCTGCGGAATA 163 611 56 Antisense
AAGACGGATGCTTCATGCTAACCTG 377 153 89 Antisense
AACCTGCCCCGAAAATACATATCCA 590 145 108 Antisense
TACATATCCATCGTTCTTCAGTCAA 464 643 123 Antisense
TTTCAATACAGCGAAATCCCTCCAC 521 673 148 Antisense
CTCCACCTGGTAACTTGATTCCTCA 296 235 167 Antisense
GATTCCTCAGAATGCACTGGAGATC 193 433 183 Antisense
CACTGGAGATCAGTCCTCCAACCTC 259 199 197 Antisense
AGTCCTCCAACCTCACTGGAAGAAA 585 59 208 Antisense
GTGCCAGCCTATCTGAGTACTTTGG 598 477 239 Antisense
ACAAAGATCCACCTAGTTACACAAA 633 111 323 Antisense
Sequence Source Affymetrix Proprietary Database