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[186555_at]

Description Y102A5C.23 /REP_DB=WormBase Gene ID /WP=CE20395 /TR=Q9XX71 /GB=CAA20964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 18      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 65.6
(1.6)
A 		22.3
(-3)
A 		78.8
(3)
A 		70.9
(2.2)
A 		57
B 79.6
(0.4)
A 		113.1
(3)
A 		35
(-3)
A 		89.5
(1.2)
A 		78
C 45.7
(-3)
A 		103.8
(-0.4)
A 		70.7
(-1.9)
A 		179.9
(3)
P 		134
avr 63.6
(-2.8) 		79.7
(-0.9) 		61.5
(-3) 		113.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 49.3
(0.6)
A 		16.5
(-2.3)
A 		75.5
(3)
P 		47.7
(0.5)
A 		63.3
(1.9)
A 		8.9
(-3)
A 		67
B 31.7
(-1)
A 		31.8
(-1)
A 		31.8
(-1)
A 		53.3
(3)
A 		40.5
(0.6)
A 		21.1
(-3)
A 		32
C 57.1
(0.2)
A 		76.4
(3)
A 		44.7
(-1.6)
A 		41.2
(-2.1)
A 		35.2
(-2.9)
A 		34.6
(-3)
A 		42
avr 46
(2) 		41.6
(1.1) 		50.7
(3) 		47.4
(2.3) 		46.3
(2.1) 		21.5
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 23.9
(3)
A 		4.8
(-3)
A 		20.6
(2)
A 		10.4
(-1.2)
A 		19
B 25.4
(2.2)
A 		27.9
(3)
A 		8.1
(-3)
A 		19.1
(0.3)
A 		20
C 15.1
(-3)
A 		29.8
(2.8)
A 		24.6
(0.8)
A 		30.3
(3)
P 		15
avr 21.5
(3) 		20.8
(1.9) 		17.8
(-3) 		19.9
(0.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.1
(-0.6)
A 		5.9
(-1.7)
A 		16.4
(2)
P 		12.1
(0.5)
A 		19.1
(3)
A 		2.2
(-3)
A 		17
B 11
(-0.8)
A 		10.6
(-1)
A 		7.7
(-3)
A 		14.1
(1.4)
A 		16.5
(3)
A 		7.9
(-2.9)
A 		9
C 21.2
(2.2)
A 		23.3
(3)
A 		11.4
(-1.8)
A 		8.3
(-3)
A 		11.4
(-1.8)
A 		11.6
(-1.7)
A 		15
avr 13.8
(1.7) 		13.3
(1.3) 		11.8
(0.2) 		11.5
(0) 		15.7
(3) 		7.2
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13073
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.23 NCBI
Target Description Y102A5C.23 /REP_DB=WormBase Gene ID /WP=CE20395 /TR=Q9XX71 /GB=CAA20964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074893 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-53) (srz-53) mRNA, complete cds. 11/11 None
GENEFINDER00000003192 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16977797:16980986:1 10/11 None
Y102A5C.23 ENSEMBL cdna:known chromosome:CEL140:V:16979769:16980986:1 gene:Y102A5C.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16979768-16980986(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-53
Ensembl Y102A5C.23
Entrez Gene 190846 Entrez gene
SwissProt Q9XX71 EMBL-EBI
WormBase CE20395 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20964 Hypothetical protein Y102A5C.23 [Caenorhabditis elegans] ref|NP_507294.1| Serpentine Receptor, class Z family member (srz-53) [Caenorhabditis elegans] 1.0E-163
blast CAA20964 Hypothetical protein Y102A5C.23 [Caenorhabditis elegans] ref|NP_507294.1| Serpentine Receptor, class Z family member (srz-53) [Caenorhabditis elegans] 1.0E-126
blast CAA20966 Hypothetical protein Y102A5C.25 [Caenorhabditis elegans] ref|NP_507296.1| Serpentine Receptor, class Z family member (srz-54) [Caenorhabditis elegans] 4.0E-99
blast T26365 hypothetical protein Y102A5C.26 - Caenorhabditis elegans 7.0E-99
blast CAA20966 Hypothetical protein Y102A5C.25 [Caenorhabditis elegans] ref|NP_507296.1| Serpentine Receptor, class Z family member (srz-54) [Caenorhabditis elegans] 3.0E-81
blast T26365 hypothetical protein Y102A5C.26 - Caenorhabditis elegans 9.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.0E-34
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.2E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507294.1 7 24-46,71-93,98-120,137-154,164-186,205-227,237-259
Y102A5C.23 7 24-46,71-93,98-120,137-154,164-186,205-227,237-259
GENEFINDER00000003192 9 20-42,55-77,140-157,258-280,285-307,324-341,356-378,398-420,430-452
Sequence
Target Sequence 
>C. ELEGANS:186555_AT
actcaagtcttccatgtgttactgtttgtactcgcagttgaacgattttttatatacttt
ataccatccagcgggaaactattcaaattttcgcgatgtaaaatcaaacccttgtacttt
ttgataattacaaaagaagtatcatgtttactatacgcatcttgggattatgagcctgtt
caatttcaatactggataacgtgctctatcaatgatgctcttgtatttctctcagctatt
ttatatattccgattgtaataagtattcggaaatatgcaaatttgaggtgggctcaacgt
tcccagcctcataaatatattttcttacagacaatggtagttttaacattcaaatcgatc
caagttctcgtatgcctcatgacaaaccataatggtatttccttaactagtttattcata
tacgctatagtattctcagacattatcaccacgccgttgattgttcagatgtcgtattta
tcatgcaataaaagaaacatgaacgttttgctctccactataagtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCAAGTCTTCCATGTGTTACTGT 374 101 310 Antisense
ATACTTTATACCATCCAGCGGGAAA 608 21 363 Antisense
TCATGTTTACTATACGCATCTTGGG 638 619 451 Antisense
GCATCTTGGGATTATGAGCCTGTTC 570 307 466 Antisense
GAGCCTGTTCAATTTCAATACTGGA 622 385 481 Antisense
TGATGCTCTTGTATTTCTCTCAGCT 146 567 522 Antisense
TTTGAGGTGGGCTCAACGTTCCCAG 351 663 591 Antisense
CAACGTTCCCAGCCTCATAAATATA 314 187 604 Antisense
ATCGATCCAAGTTCTCGTATGCCTC 166 37 663 Antisense
TCACCACGCCGTTGATTGTTCAGAT 412 625 755 Antisense
CGTTTTGCTCTCCACTATAAGTGCT 391 247 813 Antisense
Sequence Source Affymetrix Proprietary Database