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[186553_at]

Description Y116A8C.26 /REP_DB=WormBase Gene ID /WP=CE28107 /TR=Q9U2U6 /GB=CAB55131.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 12      4grp_high_8_8 > 33      6grp_total > 34      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 296.2
(3)
P 		162.8
(-2.8)
P 		167.3
(-2.6)
P 		157.5
(-3)
M 		139
B 334.2
(3)
P 		132.7
(-1.2)
P 		49.7
(-3)
P 		132.3
(-1.3)
P 		285
C 199.8
(3)
P 		176
(0.9)
P 		164
(-0.1)
P 		130.9
(-3)
P 		69
avr 276.7
(3) 		157.2
(-1.8) 		127
(-3) 		140.2
(-2.5) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 119.4
(-0)
P 		139.5
(1.4)
P 		163.2
(3)
P 		125.3
(0.4)
P 		81.9
(-2.6)
P 		76.1
(-3)
P 		87
B 173.7
(3)
P 		144.6
(1)
P 		166.3
(2.5)
P 		117.7
(-0.8)
P 		85.2
(-3)
P 		96.6
(-2.2)
P 		89
C 206.2
(3)
P 		166.4
(1.3)
P 		176.4
(1.7)
P 		65.2
(-3)
A 		155
(0.8)
P 		129.1
(-0.3)
P 		141
avr 166.4
(2.8) 		150.2
(1.4) 		168.6
(3) 		102.7
(-2.8) 		107.4
(-2.4) 		100.6
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 107.8
(3)
P 		35.3
(-2.1)
P 		43.7
(-1.5)
P 		23.1
(-3)
M 		85
B 106.6
(3)
P 		32.8
(-1.7)
P 		11.5
(-3)
P 		28.2
(-1.9)
P 		95
C 66.1
(3)
P 		50.6
(0.9)
P 		57.2
(1.8)
P 		22.1
(-3)
P 		44
avr 93.5
(3) 		39.6
(-1.7) 		37.5
(-1.9) 		24.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 22
(-2.3)
P 		49.6
(3)
P 		35.5
(0.3)
P 		31.8
(-0.4)
P 		24.7
(-1.8)
P 		18.5
(-3)
P 		31
B 60.4
(3)
P 		48.1
(0.5)
P 		40.4
(-1.1)
P 		31.2
(-3)
P 		34.6
(-2.3)
P 		36
(-2)
P 		29
C 76.4
(3)
P 		50.8
(0.6)
P 		44.9
(0)
P 		13.1
(-3)
A 		50.1
(0.5)
P 		43.2
(-0.1)
P 		63
avr 52.9
(3) 		49.5
(2.3) 		40.3
(0.3) 		25.4
(-3) 		36.5
(-0.6) 		32.6
(-1.4) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9935
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.26 NCBI
Target Description Y116A8C.26 /REP_DB=WormBase Gene ID /WP=CE28107 /TR=Q9U2U6 /GB=CAB55131.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070625(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070625 NCBI Caenorhabditis elegans Y116A8C.26 (Y116A8C.26) mRNA, complete cds. 10/11 A 
SNAP00000004098 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17075897:17087286:-1 10/11 None
GENEFINDER00000004173 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17079805:17087286:-1 11/11 None
Y116A8C.26 ENSEMBL cdna:known chromosome:CEL140:IV:17079706:17087336:-1 gene:Y116A8C.26 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17079810-17087292(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.26
Entrez Gene 178482 Entrez gene
SwissProt Q9U2U6 EMBL-EBI
WormBase CE28107 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605370_AT similar to Sorting nexin-13 (RGS domain- and PHOX domain-containing protein) (RGS-PX1) cfa
CANINE_2:CFAAFFX.4575.1.S1_AT similar to Sorting nexin-13 (RGS domain- and PHOX domain-containing protein) (RGS-PX1) cfa
CANINE_2:CFAAFFX.4575.1.S1_S_AT similar to Sorting nexin-13 (RGS domain- and PHOX domain-containing protein) (RGS-PX1) cfa
CHICKEN:GGAAFFX.11431.1.S1_AT sorting nexin 13 gga
CHICKEN:GGAAFFX.23342.1.S1_AT sorting nexin 13 gga
CHICKEN:GGAAFFX.23342.1.S1_S_AT sorting nexin 13 gga
HG-U133_PLUS_2:215366_AT sorting nexin 13 hs
HG-U133A_2:215366_AT sorting nexin 13 hs
HG-U133A:215366_AT sorting nexin 13 hs
HG-U133_PLUS_2:215820_X_AT sorting nexin 13 hs
HG-U133A_2:215820_X_AT sorting nexin 13 hs
HG-U133A:215820_X_AT sorting nexin 13 hs
HU35KSUBB:RC_R33832_AT sorting nexin 13 hs
HU35KSUBC:RC_AA280431_AT sorting nexin 13 hs
HU35KSUBC:RC_AA253011_F_AT sorting nexin 13 hs
U133_X3P:HS2.283881.1.S2_3P_S_AT sorting nexin 13 hs
U133_X3P:HS.284191.0.S1_3P_AT sorting nexin 13 hs
U133_X3P:HS.283881.2.S1_3P_S_AT sorting nexin 13 hs
U133_X3P:HS.283881.2.S1_3P_AT sorting nexin 13 hs
U133_X3P:HS.283881.0.S1_3P_A_AT sorting nexin 13 hs
U133_X3P:215820_3P_X_AT sorting nexin 13 hs
HG-U133_PLUS_2:1553148_A_AT sorting nexin 13 hs
HG-U133A_2:213292_S_AT sorting nexin 13 hs
HG-U133_PLUS_2:213292_S_AT sorting nexin 13 hs
HG-U133A:213292_S_AT sorting nexin 13 hs
HG-U95AV2:37973_AT sorting nexin 13 hs
HG-U133_PLUS_2:227031_AT Sorting nexin 13 hs
HG-U133B:227031_AT Sorting nexin 13 hs
HG-U95B:44519_AT Sorting nexin 13 hs
HG-U95B:56659_AT Sorting nexin 13 hs
HG-U95E:75071_AT Sorting nexin 13 hs
HG-U95D:86975_I_AT Sorting nexin 13 hs
HG-U95D:86976_R_AT Sorting nexin 13 hs
HU35KSUBC:RC_AA281886_AT Sorting nexin 13 hs
HU35KSUBB:RC_N62972_AT Sorting nexin 13 hs
U133_X3P:HS.29468.0.A1_3P_AT Sorting nexin 13 hs
MU11KSUBA:AA409992_AT sorting nexin 13 mm
MG-U74AV2:103745_AT sorting nexin 13 mm
MG-U74BV2:115500_AT sorting nexin 13 mm
MOE430B:1454938_AT sorting nexin 13 mm
MOUSE430_2:1454938_AT sorting nexin 13 mm
MOE430B:1435251_AT sorting nexin 13 mm
MOUSE430_2:1435251_AT sorting nexin 13 mm
MOE430B:1444141_AT sorting nexin 13 mm
MOUSE430_2:1444141_AT sorting nexin 13 mm
MU19KSUBC:TC38285_AT Sorting nexin 13 (Snx13), mRNA mm
RAE230B:1395221_AT sorting nexin 13 (predicted) rn
RAT230_2:1395221_AT sorting nexin 13 (predicted) rn
RAE230B:1379388_AT sorting nexin 13 (predicted) rn
RAT230_2:1379388_AT sorting nexin 13 (predicted) rn
RAE230A:1389647_AT Sorting nexin 13 (predicted) rn
RAT230_2:1389647_AT Sorting nexin 13 (predicted) rn
RG-U34B:RC_AA849829_AT Sorting nexin 13 (predicted) rn
RG-U34B:RC_AA996954_AT Sorting nexin 13 (predicted) rn
RG-U34B:RC_AI030852_AT Sorting nexin 13 (predicted) rn
YEAST_2:1779365_AT Intermediate filament protein, required for nuclear and mitochondrial transmission to daughter buds Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55131 Hypothetical protein Y116A8C.26 [Caenorhabditis elegans] ref|NP_503026.1| Y116A8C.26 [Caenorhabditis elegans] 0.0
blast CAE57463 Hypothetical protein CBG00428 [Caenorhabditis briggsae] 0.0
blast NP_001014973 sorting nexin 13 [Mus musculus] gb|AAH56394.1| Sorting nexin 13 [Mus musculus] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR003114 EMBL-EBI PX-associated 4.6E-30
Pfam IPR001683 EMBL-EBI Phox-like 3.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503026.1 1 7-41
Y116A8C.26 1 7-41
SNAP00000004098 1 7-41
GENEFINDER00000004173 1 7-41
Sequence
Target Sequence 
>C. ELEGANS:186553_AT
ggtgttgggattaataatgccgccaaaattattattaatcctagcagtagtagcacagta
aatcgaccgcccgtaatggaaaccgatagagttgctgcttcattaacggatacggaatcc
gagaatatcccgctccgagttctggttctcgtcgtcagtgaagtatttggagctcaagga
agtgcttggttccggcgtcaattggttactgtaataaaacatattgtaactccatttgga
acatcgattaacaaacgaattgtggatattgttaattggttgactagtgaacaacaagtt
ggaggatatttgaattcttttagagaatcaatgtggccaaatggtgaactagcagccgaa
tatgtcgaaaaaccaccggagcttcaccacaaaacccgtctactcgcgaaaactctgatg
ctttcatcacttcccgacgagctacggattatacttggcgctaatggaatcaacacgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTTGGGATTAATAATGCCGCCA 153 501 2128 Antisense
TAATCCTAGCAGTAGTAGCACAGTA 514 635 2163 Antisense
TCGACCGCCCGTAATGGAAACCGAT 40 525 2190 Antisense
GGAAACCGATAGAGTTGCTGCTTCA 556 527 2205 Antisense
TTGCTGCTTCATTAACGGATACGGA 310 703 2219 Antisense
ACGGAATCCGAGAATATCCCGCTCC 14 97 2239 Antisense
TCTGGTTCTCGTCGTCAGTGAAGTA 391 607 2268 Antisense
CAAGGAAGTGCTTGGTTCCGGCGTC 647 181 2302 Antisense
GTTCCGGCGTCAATTGGTTACTGTA 225 441 2316 Antisense
ACTCCATTTGGAACATCGATTAACA 370 89 2356 Antisense
TGGCGCTAATGGAATCAACACGATA 445 543 2583 Antisense
Sequence Source Affymetrix Proprietary Database