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[186552_s_at]

Description Y116A8C.33 /REP_DB=WormBase Gene ID /WP=CE24151 /TR=Q9U2S0 /GB=CAB55157.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 33      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.6
(-3)
A 		8.1
(-1.6)
A 		2.9
(-2.7)
A 		30.2
(3)
A 		29
B 14.1
(-0.2)
A 		27.2
(3)
A 		25.6
(2.6)
A 		3
(-3)
A 		24
C 1.7
(-3)
A 		3
(-1.1)
A 		4.9
(1.7)
A 		5.8
(3)
A 		4
avr 5.8
(-3) 		12.8
(2.8) 		11.1
(1.4) 		13
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.1
(-1.6)
A 		1
(-3)
A 		1.6
(-2.3)
A 		5.8
(3)
A 		4.1
(0.9)
A 		4.8
(1.8)
A 		5
B 2.1
(-2.5)
A 		2.8
(-2.1)
A 		1.2
(-3)
A 		1.5
(-2.8)
A 		5.3
(-0.7)
A 		11.8
(3)
A 		11
C 4.1
(-1.7)
A 		2.7
(-3)
A 		4.7
(-1.1)
A 		9
(3)
A 		3.5
(-2.2)
A 		5.7
(-0.1)
A 		6
avr 2.8
(-2.3) 		2.2
(-3) 		2.5
(-2.7) 		5.4
(0.7) 		4.3
(-0.6) 		7.4
(3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-3)
A 		1.8
(-1.1)
A 		0.8
(-2.7)
A 		4.4
(3)
A 		4
B 4.5
(0.8)
A 		6.7
(3)
A 		5.9
(2.2)
A 		0.6
(-3)
A 		6
C 0.6
(-3)
A 		0.9
(-1.4)
A 		1.7
(3)
A 		1
(-0.8)
A 		1
avr 1.9
(-3) 		3.1
(3) 		2.8
(1.5) 		2
(-2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-2.5)
A 		0.4
(-2.5)
A 		0.3
(-3)
A 		1.5
(3)
A 		1.2
(1.5)
A 		1.2
(1.5)
A 		1
B 0.7
(-2.4)
A 		0.9
(-2.1)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		2.2
(-0.2)
A 		4.4
(3)
A 		4
C 1.5
(0.8)
A 		0.8
(-3)
A 		1.2
(-0.8)
A 		1.8
(2.5)
A 		1.1
(-1.4)
A 		1.9
(3)
A 		1
avr 0.9
(-2.1) 		0.7
(-2.7) 		0.6
(-3) 		1.2
(-1.1) 		1.5
(-0.2) 		2.5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186552_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10068
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.33 NCBI
Target Description Y116A8C.33 /REP_DB=WormBase Gene ID /WP=CE24151 /TR=Q9U2S0 /GB=CAB55157.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070634 NCBI Caenorhabditis elegans Y116A8C.33 (Y116A8C.33) mRNA, complete cds. 11/11 A 
SNAP00000004104 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17110799:17116649:1 11/11 None
GENEFINDER00000004203 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17112137:17115373:1 11/11 None
Y116A8C.33 ENSEMBL cdna:known chromosome:CEL140:IV:17112099:17115373:1 gene:Y116A8C.33 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17112142-17115379(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.33
Entrez Gene 178488 Entrez gene
SwissProt Q9U2S0 EMBL-EBI
WormBase CE24151 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55157 Hypothetical protein Y116A8C.33 [Caenorhabditis elegans] ref|NP_503035.1| Y116A8C.33 [Caenorhabditis elegans] 0.0
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 3.0E-72
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 7.0E-72
blast CAB05258 Hypothetical protein M162.7 [Caenorhabditis elegans] ref|NP_507838.1| M162.7 [Caenorhabditis elegans] 8.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-5
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-5
Sequence
Target Sequence 
>C. ELEGANS:186552_S_AT
gtgtctatagtctagtggacttggagccactgattagtcaggtcaagggacatgaagata
tttcttccttagagacagcaataagtcaagcaaaagcttatatttcaagaattgatgtgt
ggagagctaaatcattgaaaggatacactaatccgctcaagaacttgacagccgaaattc
cggacattgatattatcccaattgaaaaggccctcagagccatggatccggcgagccctt
ttcttgagaagattgcagcgttggattttattttatcaaagcacaatacaattttgcaat
gggccccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCTATAGTCTAGTGGACTTGGA 74 485 1775 Antisense
GATATTTCTTCCTTAGAGACAGCAA 135 427 1831 Antisense
GATACACTAATCCGCTCAAGAACTT 523 423 1916 Antisense
AAGAACTTGACAGCCGAAATTCCGG 123 151 1933 Antisense
ATTCCGGACATTGATATTATCCCAA 313 7 1951 Antisense
TTATCCCAATTGAAAAGGCCCTCAG 279 681 1967 Antisense
AAAAGGCCCTCAGAGCCATGGATCC 3 133 1979 Antisense
CCTCAGAGCCATGGATCCGGCGAGC 9 259 1986 Antisense
GGCGAGCCCTTTTCTTGAGAAGATT 367 541 2004 Antisense
GATTGCAGCGTTGGATTTTATTTTA 34 435 2025 Antisense
ATACAATTTTGCAATGGGCCCCATT 602 23 2060 Antisense
Sequence Source Affymetrix Proprietary Database