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[186551_at]

Description Y116A8C.33 /REP_DB=WormBase Gene ID /WP=CE24151 /TR=Q9U2S0 /GB=CAB55157.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 0.9
(-3)
A 		2.8
(-2.8)
A 		1.9
(-2.9)
A 		47.8
(3)
A 		47
B 5
(-1.5)
A 		16.6
(3)
A 		1.2
(-3)
A 		2.4
(-2.5)
A 		15
C 1.4
(-1.4)
A 		3.1
(3)
A 		0.8
(-3)
A 		2.7
(2)
A 		2
avr 2.4
(-2.6) 		7.5
(-0.7) 		1.3
(-3) 		17.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		1.2
(-3)
A 		17.3
(0.9)
A 		3
(-2.6)
A 		2.3
(-2.7)
A 		25.8
(3)
A 		25
B 1.7
(-2.9)
A 		1.4
(-3)
A 		3.9
(-2)
A 		1.8
(-2.8)
A 		17.1
(3)
A 		2.4
(-2.6)
A 		16
C 0.7
(-3)
A 		4.9
(-2.2)
A 		3.9
(-2.4)
A 		5.2
(-2.2)
A 		2.8
(-2.6)
A 		33.3
(3)
A 		33
avr 1.6
(-3) 		2.5
(-2.7) 		8.4
(-0.8) 		3.3
(-2.5) 		7.4
(-1.2) 		20.5
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.3
(-3)
A 		0.6
(-2.7)
A 		0.5
(-2.8)
A 		7
(3)
A 		7
B 1.6
(-0.9)
A 		4.1
(3)
A 		0.3
(-3)
A 		0.5
(-2.7)
A 		4
C 0.5
(-1)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.4
(-2)
A 		1
avr 0.8
(-1.9) 		1.9
(1.1) 		0.4
(-3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.4
(-3)
A 		3.8
(0.5)
A 		0.8
(-2.6)
A 		0.7
(-2.7)
A 		6.3
(3)
A 		6
B 0.6
(-2.9)
A 		0.5
(-3)
A 		1
(-2.5)
A 		0.5
(-3)
A 		6.9
(3)
A 		0.9
(-2.6)
A 		6
C 0.3
(-3)
A 		1.5
(-2.3)
A 		1
(-2.6)
A 		1
(-2.6)
A 		0.9
(-2.7)
A 		11.2
(3)
A 		11
avr 0.4
(-3) 		0.8
(-2.6) 		1.9
(-1.4) 		0.8
(-2.6) 		2.8
(-0.5) 		6.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10068
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.33 NCBI
Target Description Y116A8C.33 /REP_DB=WormBase Gene ID /WP=CE24151 /TR=Q9U2S0 /GB=CAB55157.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070634 NCBI Caenorhabditis elegans Y116A8C.33 (Y116A8C.33) mRNA, complete cds. 11/11 A 
SNAP00000004104 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17110799:17116649:1 10/11 None
GENEFINDER00000004203 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17112137:17115373:1 11/11 None
Y116A8C.33 ENSEMBL cdna:known chromosome:CEL140:IV:17112099:17115373:1 gene:Y116A8C.33 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17112142-17115379(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.33
Entrez Gene 178488 Entrez gene
SwissProt Q9U2S0 EMBL-EBI
WormBase CE24151 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55157 Hypothetical protein Y116A8C.33 [Caenorhabditis elegans] ref|NP_503035.1| Y116A8C.33 [Caenorhabditis elegans] 0.0
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 3.0E-72
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 7.0E-72
blast CAB05258 Hypothetical protein M162.7 [Caenorhabditis elegans] ref|NP_507838.1| M162.7 [Caenorhabditis elegans] 8.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-5
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-5
Sequence
Target Sequence 
>C. ELEGANS:186551_AT
gaagctgttatccgtatggttccattgattcaagcgtttatgagagcagatttgcaaaat
gttcaacagattgctccattggtatccaaattttcacacgaactctctacagtgaaaaca
attccagagaaaatgagagaagttgcgagtccggtgacattgagaatgaatgagatgtcg
cagatgttgaatcaaaccgatgaaattggcatatctcagagtgtagttcaaagtgtctat
agtctagtggacttggagccactgattagtcaggtcaagggacatgaagatatttcttcc
ttagagacagcaataagtcaagcaaaagcttatatttcaagaattgatgtgtggagagct
aaatcattgaaaggatacactaatccgctcaagaacttgacagccgaaattccggacatt
gatattatcccaattgaaaaggccctcagagccatggatccggcgagcccttttcttgag
aagattgcagcgttggattttattttatcaaagcacaatacaattttgcaatgggcccca
ttcaaatttggagttcttcaggaatttctagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGTTATCCGTATGGTTCCAT 537 341 1543 Antisense
CGTATGGTTCCATTGATTCAAGCGT 686 245 1555 Antisense
AATGTTCAACAGATTGCTCCATTGG 462 163 1600 Antisense
GCTCCATTGGTATCCAAATTTTCAC 493 297 1615 Antisense
AATTTTCACACGAACTCTCTACAGT 155 175 1631 Antisense
GAGAGAAGTTGCGAGTCCGGTGACA 410 393 1677 Antisense
GTTGCGAGTCCGGTGACATTGAGAA 190 439 1684 Antisense
ATGAATGAGATGTCGCAGATGTTGA 149 43 1708 Antisense
GAAATTGGCATATCTCAGAGTGTAG 204 363 1744 Antisense
GTGTAGTTCAAAGTGTCTATAGTCT 206 485 1763 Antisense
GGAGTTCTTCAGGAATTTCTAGAGA 690 517 2092 Antisense
Sequence Source Affymetrix Proprietary Database