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[186550_at]

Description T28A11.18 /REP_DB=WormBase Gene ID /WP=CE14313 /TR=P91516 /GB=AAC48130.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 05      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 27.3
(-0.7)
A 		7.4
(-3)
A 		19
(-1.7)
A 		59.4
(3)
P 		52
B 38.8
(3)
A 		21.5
(-0.9)
A 		12.5
(-3)
A 		38.7
(3)
P 		26
C 10.3
(-3)
A 		11.1
(-2.9)
A 		12.1
(-2.7)
A 		49.1
(3)
P 		39
avr 25.5
(-1) 		13.3
(-3) 		14.5
(-2.8) 		49.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.5
(-2.9)
A 		21.4
(-0.1)
A 		40.4
(3)
A 		22
(0)
A 		11.9
(-1.6)
A 		3.1
(-3)
A 		37
B 1.9
(-3)
A 		15.7
(-0.1)
A 		30.5
(3)
P 		20.3
(0.9)
A 		22.5
(1.3)
A 		30.2
(2.9)
P 		29
C 3.8
(-3)
A 		36.2
(1.8)
A 		29.6
(0.8)
A 		44.7
(3)
A 		8.6
(-2.3)
A 		16
(-1.2)
A 		41
avr 3.1
(-3) 		24.4
(1.2) 		33.5
(3) 		29
(2.1) 		14.3
(-0.8) 		16.4
(-0.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.9
(3)
A 		1.6
(-3)
A 		5
(-0.5)
A 		8.7
(2.1)
P 		8
B 12.4
(3)
A 		5.3
(-1.5)
A 		2.9
(-3)
A 		8.2
(0.3)
P 		10
C 3.4
(-2.8)
A 		3.2
(-3)
A 		4.2
(-1.8)
A 		8.3
(3)
P 		5
avr 8.6
(3) 		3.4
(-3) 		4
(-2.3) 		8.4
(2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		7.6
(2.1)
A 		8.8
(3)
A 		5.6
(0.7)
A 		3.6
(-0.8)
A 		0.8
(-2.9)
A 		8
B 0.7
(-3)
A 		5.2
(-0.5)
A 		7.4
(0.8)
P 		5.4
(-0.3)
A 		9.2
(1.8)
A 		11.3
(3)
P 		11
C 1.4
(-3)
A 		11
(3)
A 		7.5
(0.8)
A 		9
(1.8)
A 		2.8
(-2.1)
A 		5.3
(-0.6)
A 		10
avr 0.9
(-3) 		7.9
(3) 		7.9
(3) 		6.7
(2) 		5.2
(0.7) 		5.8
(1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14946
Sequence Type Exemplar sequence
Representative Public ID T28A11.18 NCBI
Target Description T28A11.18 /REP_DB=WormBase Gene ID /WP=CE14313 /TR=P91516 /GB=AAC48130.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071498 NCBI Caenorhabditis elegans T28A11.18 (T28A11.18) mRNA, complete cds. 11/11 None
SNAP00000028211 ENSEMBL cdna:SNAP chromosome:CEL140:V:3266655:3267874:-1 11/11 None
GENEFINDER00000028230 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3266655:3267874:-1 11/11 None
T28A11.18 ENSEMBL cdna:known chromosome:CEL140:V:3266655:3268106:-1 gene:T28A11.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3266654-3268106(-) 100.0 100.0
chrV:3330740-3331951(-) 93.66 93.66
Public Domain and Genome References
Gene Title
Ensembl T28A11.18
Entrez Gene 189023 Entrez gene
SwissProt P91516 EMBL-EBI
WormBase CE14313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503899 T28A11.18 [Caenorhabditis elegans] gb|AAC48130.1| Hypothetical protein T28A11.18 [Caenorhabditis elegans] 1.0E-121
blast NP_503899 T28A11.18 [Caenorhabditis elegans] gb|AAC48130.1| Hypothetical protein T28A11.18 [Caenorhabditis elegans] 1.0E-118
blast AAC04403 Hypothetical protein C17B7.9 [Caenorhabditis elegans] ref|NP_503923.1| C17B7.9 [Caenorhabditis elegans] 1.0E-107
blast AAB37587 Hypothetical protein T20D4.10 [Caenorhabditis elegans] ref|NP_503951.1| T20D4.10 [Caenorhabditis elegans] 4.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.8E-87
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.8E-87
Sequence
Target Sequence 
>C. ELEGANS:186550_AT
ggcactgtgtttttgggtgttgttcatcaagcagtttctacggcagcacaagacgccggc
tgtactgatgaagaatcacttaggacacattcttgtgacctggttctggccgatttcctc
gaaaatcctggcaacctcgacgtgaagaacaaaaagaggttaaaggaatacaaggatgat
tgccataacgtactcagttgctacaacaaaatcaaatgtttgggaacaaatggggaaaaa
attccagcggttaagtatattggaaagcattgcagagctacggattacgtacacgatgat
tttgccaagtgtagtgacaaattgaatgcaaagaaatcaacatgtttcgatgactgggac
ccaattccaaacaacgtcactactgaaaaagtcccaaaaaaatttgaccagttgatgagt
gagtcttgtaaaacatgttttggaaaagacaactgcatgatgaaggaaattaaagaaaca
tgtggccaacaagagtgggacttattccgtgtgcatttcataattatcgctggtggattt
ttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACTGTGTTTTTGGGTGTTGTTC 389 535 55 Antisense
GGGTGTTGTTCATCAAGCAGTTTCT 410 497 69 Antisense
AGCAGTTTCTACGGCAGCACAAGAC 44 79 84 Antisense
GACACATTCTTGTGACCTGGTTCTG 259 365 138 Antisense
TCCTCGAAAATCCTGGCAACCTCGA 369 593 170 Antisense
ATCCTGGCAACCTCGACGTGAAGAA 222 37 179 Antisense
AAAATTCCAGCGGTTAAGTATATTG 689 131 292 Antisense
ATGTGGCCAACAAGAGTGGGACTTA 556 49 534 Antisense
GTGGGACTTATTCCGTGTGCATTTC 249 489 549 Antisense
GTGTGCATTTCATAATTATCGCTGG 639 485 563 Antisense
CATAATTATCGCTGGTGGATTTTTC 427 213 573 Antisense
Sequence Source Affymetrix Proprietary Database