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[186549_at]

Description ZK632.9 /REP_DB=WormBase Gene ID /WP=CE28193 /TR=SW:P34654 /GB=CAA80189.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 64      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_total > 54      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 398.3
(-3)
P 		473
(2.9)
P 		473.7
(3)
P 		410
(-2.1)
P 		75
B 563.3
(3)
P 		375.6
(-2.5)
P 		418.7
(-1.2)
P 		358.7
(-3)
P 		205
C 602.3
(3)
P 		323.4
(-3)
P 		352.7
(-2.4)
P 		409.2
(-1.2)
P 		279
avr 521.3
(3) 		390.7
(-3) 		415
(-1.9) 		392.6
(-2.9) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 381.5
(-2.6)
P 		368.5
(-3)
P 		555.2
(3)
P 		397.8
(-2.1)
P 		529.9
(2.2)
P 		449.8
(-0.4)
P 		187
B 433.1
(-2.2)
P 		496.8
(-0.5)
P 		624.7
(3)
P 		487.8
(-0.7)
P 		491.9
(-0.6)
P 		404.3
(-3)
P 		220
C 516.3
(0.7)
P 		582.5
(1.9)
P 		389.9
(-1.6)
M 		310.1
(-3)
P 		542.6
(1.2)
P 		644.5
(3)
P 		334
avr 443.6
(-0.8) 		482.6
(1) 		523.3
(3) 		398.6
(-3) 		521.5
(2.9) 		499.5
(1.9) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 145
(3)
P 		102.7
(0)
P 		123.8
(1.5)
P 		60
(-3)
P 		85
B 179.6
(3)
P 		92.8
(-2)
P 		97
(-1.8)
P 		76.4
(-3)
P 		103
C 199.4
(3)
P 		93
(-1.9)
P 		122.9
(-0.5)
P 		69
(-3)
P 		130
avr 174.7
(3) 		96.2
(-1.4) 		114.6
(-0.4) 		68.5
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 70.3
(-3)
P 		131.1
(1.1)
P 		120.9
(0.4)
P 		100.9
(-1)
P 		159.9
(3)
P 		109.5
(-0.4)
P 		90
B 150.7
(-1.2)
P 		165.4
(0.1)
P 		151.7
(-1.1)
P 		129.2
(-3)
P 		199.9
(3)
P 		150.7
(-1.2)
P 		71
C 191.4
(2)
P 		177.7
(1.5)
P 		99.2
(-1.6)
M 		62.4
(-3)
P 		175.6
(1.4)
P 		215.7
(3)
P 		153
avr 137.5
(-0) 		158.1
(1.5) 		123.9
(-1) 		97.5
(-3) 		178.5
(3) 		158.6
(1.5) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6514
Sequence Type Exemplar sequence
Representative Public ID ZK632.9 NCBI
Target Description ZK632.9 /REP_DB=WormBase Gene ID /WP=CE28193 /TR=SW:P34654 /GB=CAA80189.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066779
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066779 NCBI Caenorhabditis elegans ZK632.9 (ZK632.9) mRNA, complete cds. None
GENEFINDER00000031483 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9824052:9827045:-1 None
SNAP00000031480 ENSEMBL cdna:SNAP chromosome:CEL140:III:9824959:9825311:-1 None
ZK632.9.1 ENSEMBL cdna:known chromosome:CEL140:III:9824767:9825339:-1 gene:ZK632.9 None
ZK632.9.2 ENSEMBL cdna:known chromosome:CEL140:III:9824767:9825326:-1 gene:ZK632.9 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9824898-9825307(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.9
Entrez Gene 176394 Entrez gene
SwissProt P34654 EMBL-EBI
WormBase CE28193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80188 Hypothetical protein ZK632.13 [Caenorhabditis elegans] ref|NP_499179.1| abnormal cell LINeage family member (lin-52) [Caenorhabditis elegans] gb|AAP85302.1| LIN-52 [Caenorhabditis elegans] sp|Q10120|LIN52_CAEEL Protein lin-52 (Abnormal cell lineage protein 52) 6.0E-88
blast CAE65119 Hypothetical protein CBG09984 [Caenorhabditis briggsae] 6.0E-55
blast CAA80189 Hypothetical protein ZK632.9 [Caenorhabditis elegans] ref|NP_499180.1| ZK632.9 [Caenorhabditis elegans] sp|P34654|YOT9_CAEEL Hypothetical protein ZK632.9 in chromosome III 2.0E-28
blast A88567 protein ZK632.9 [imported] - Caenorhabditis elegans 2.0E-28
blast CAA80189 Hypothetical protein ZK632.9 [Caenorhabditis elegans] ref|NP_499180.1| ZK632.9 [Caenorhabditis elegans] sp|P34654|YOT9_CAEEL Hypothetical protein ZK632.9 in chromosome III 3.0E-28
blast A88567 protein ZK632.9 [imported] - Caenorhabditis elegans 3.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 4.0E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031483 2 4-23,28-50
Sequence
Target Sequence 
>C. ELEGANS:186549_AT
atgtcgtcgactgctgaagaaatggctgccgcattcgagcaaaccggaggaccggatctc
accactggaagcggaaagcgcaccaagtctgacagagtggagcacaagcacgcatctcag
ccaggaggggacactcgcaaggttgttcaaaccgccagcaacggagaggcaaagagaaaa
gagaagtggtgcgttaatatgctaccgtgtttgcggaccatgttcctatttttgattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGTCGACTGCTGAAGAAATGG 239 49 13 Antisense
GAAGAAATGGCTGCCGCATTCGAGC 123 341 28 Antisense
GCATTCGAGCAAACCGGAGGACCGG 98 307 43 Antisense
AGCAAACCGGAGGACCGGATCTCAC 269 73 50 Antisense
ACCGGATCTCACCACTGGAAGCGGA 56 87 63 Antisense
ACTGGAAGCGGAAAGCGCACCAAGT 3 97 76 Antisense
GAAGTGGTGCGTTAATATGCTACCG 155 335 195 Antisense
GCGTTAATATGCTACCGTGTTTGCG 234 291 203 Antisense
GCTACCGTGTTTGCGGACCATGTTC 420 303 213 Antisense
GTTTGCGGACCATGTTCCTATTTTT 605 445 221 Antisense
GACCATGTTCCTATTTTTGATTTTT 676 381 228 Antisense
Sequence Source Affymetrix Proprietary Database