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[186548_at]

Description Y116A8C.18 /REP_DB=WormBase Gene ID /WP=CE23327 /TR=Q9U2V3 /GB=CAB55124.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 10      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 1.1
(-3)
A 		4.3
(-2.6)
A 		7.1
(-2.3)
A 		52.1
(3)
A 		51
B 1.5
(-3)
A 		17.4
(3)
A 		2.9
(-2.5)
A 		2.1
(-2.8)
A 		16
C 1.4
(-3)
A 		1.9
(-2.9)
A 		0.9
(-3)
A 		78.2
(3)
A 		77
avr 1.3
(-3) 		7.9
(-2.1) 		3.6
(-2.7) 		44.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.9
(-2.6)
A 		1.7
(-3)
A 		4.9
(3)
A 		2.1
(-2.3)
A 		3.8
(0.9)
A 		2.3
(-1.9)
A 		3
B 1
(-3)
A 		9.4
(3)
A 		1.4
(-2.7)
A 		1.7
(-2.5)
A 		1.1
(-2.9)
A 		3.1
(-1.5)
A 		8
C 1.9
(-2.4)
A 		8.4
(3)
A 		1.5
(-2.8)
A 		2.6
(-1.8)
A 		1.2
(-3)
A 		2.2
(-2.2)
A 		7
avr 1.6
(-3) 		6.5
(3) 		2.6
(-1.8) 		2.1
(-2.4) 		2
(-2.5) 		2.5
(-1.9) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.4
(-3)
A 		0.9
(-2.6)
A 		1.9
(-1.8)
A 		7.6
(3)
A 		7
B 0.5
(-2.8)
A 		4.3
(3)
A 		0.7
(-2.5)
A 		0.4
(-3)
A 		4
C 0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		13.2
(3)
A 		13
avr 0.5
(-3) 		1.9
(-1.7) 		1
(-2.5) 		7.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-1.5)
A 		1.1
(2.3)
A 		0.5
(-2.3)
A 		1.2
(3)
A 		0.5
(-2.3)
A 		1
B 0.4
(-2.8)
A 		3.1
(3)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		0.4
(-2.8)
A 		1.2
(-1.1)
A 		3
C 0.7
(-2.2)
A 		2.6
(3)
A 		0.4
(-3)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		0.7
(-2.2)
A 		2
avr 0.5
(-3) 		2.1
(3) 		0.6
(-2.6) 		0.5
(-3) 		0.7
(-2.3) 		0.8
(-1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186548_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10004
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.18 NCBI
Target Description Y116A8C.18 /REP_DB=WormBase Gene ID /WP=CE23327 /TR=Q9U2V3 /GB=CAB55124.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070617 NCBI Caenorhabditis elegans Y116A8C.18 (Y116A8C.18) mRNA, complete cds. 11/11 None
GENEFINDER00000004164 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17028980:17030551:-1 11/11 None
Y116A8C.18 ENSEMBL cdna:known chromosome:CEL140:IV:17028980:17030970:-1 gene:Y116A8C.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004089 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17028985-17030976(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-229
Ensembl Y116A8C.18
Entrez Gene 191001 Entrez gene
SwissProt Q9U2V3 EMBL-EBI
WormBase CE23327 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55124 Hypothetical protein Y116A8C.18 [Caenorhabditis elegans] ref|NP_503018.1| Y116A8C.18 [Caenorhabditis elegans] 0.0
blast CAB55124 Hypothetical protein Y116A8C.18 [Caenorhabditis elegans] ref|NP_503018.1| Y116A8C.18 [Caenorhabditis elegans] 1.0E-160
blast CAB55144 Hypothetical protein Y116A8C.11 [Caenorhabditis elegans] ref|NP_503014.1| Y116A8C.11 [Caenorhabditis elegans] sp|Q9U2T3|Y8CB_CAEEL Hypothetical protein Y116A8C.11 7.0E-86
blast CAB55144 Hypothetical protein Y116A8C.11 [Caenorhabditis elegans] ref|NP_503014.1| Y116A8C.11 [Caenorhabditis elegans] sp|Q9U2T3|Y8CB_CAEEL Hypothetical protein Y116A8C.11 5.0E-53
blast AAL29194 nuclear receptor AmNR2 [Acropora millepora] 6.0E-12
blast AAL29194 nuclear receptor AmNR2 [Acropora millepora] 7.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186548_AT
ttctcagtctgctcgaatttcaaaaaaggaaatcggacaaacaattgaaagaccttcaat
caaagttagaacgaaatctggagcttgtagagctcaataagctacacgaagaggtccaat
cagaaagattgttaaaatcggaagtggccgagaaacttgcagaattaatcaaatcagtaa
aaacttcaaattcaatgttgttggaaaagactactcagtttgaggacgcgcagggaagca
gagaaaatgttgtggaaggtgccaatgatgagatggatacgagttttgcaagtgacgaaa
cccggactgagaactgccaagtttgtgatgcaccaaatgcacaaaagcactataatgctc
aaacatgcggaggctgctcgcaattttttagaaaaattgtaatcgattccaagcagaaca
gcctgaaatgcagtggaagtggacgttgtaaaatcaacactgtaacacgaaattattgtt
cttactgtcgatacgccaaatgtgtctcagaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCAGTCTGCTCGAATTTCAAAA 5 691 533 Antisense
AAGCTACACGAAGAGGTCCAATCAG 550 141 631 Antisense
GTGGCCGAGAAACTTGCAGAATTAA 388 491 676 Antisense
ACTCAGTTTGAGGACGCGCAGGGAA 303 99 745 Antisense
GACGAAACCCGGACTGAGAACTGCC 277 379 826 Antisense
GAACTGCCAAGTTTGTGATGCACCA 350 349 843 Antisense
ATGCTCAAACATGCGGAGGCTGCTC 294 43 887 Antisense
CGGAGGCTGCTCGCAATTTTTTAGA 87 243 900 Antisense
AATCGATTCCAAGCAGAACAGCCTG 672 167 933 Antisense
TATTGTTCTTACTGTCGATACGCCA 248 663 1006 Antisense
ATACGCCAAATGTGTCTCAGAAGGA 496 23 1023 Antisense
Sequence Source Affymetrix Proprietary Database