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[186547_at] G-protein coupled receptor, srh family

Description Y102A5C.15 /REP_DB=WormBase Gene ID /WP=CE20387 /TR=Q9XX77 /GB=CAA20958.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 18      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 61.6
(0.9)
A 		57.1
(-0.1)
A 		43.9
(-3)
A 		71
(3)
A 		27
B 8.1
(-3)
A 		72.2
(3)
A 		49.9
(0.9)
A 		31.2
(-0.8)
A 		64
C 36.3
(-2.1)
A 		21.8
(-3)
A 		28.5
(-2.6)
A 		114.4
(3)
A 		93
avr 35.3
(-3) 		50.4
(-0.5) 		40.8
(-2.1) 		72.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 51.8
(1.8)
A 		4.7
(-3)
A 		63.7
(3)
A 		17.4
(-1.7)
A 		5.6
(-2.9)
A 		46
(1.2)
A 		59
B 27.6
(1.3)
A 		15.5
(-0.8)
A 		10.2
(-1.8)
A 		37.7
(3)
A 		14.2
(-1.1)
A 		3
(-3)
A 		35
C 8.9
(-2.6)
A 		36.9
(-0.5)
A 		85.1
(3)
A 		2.9
(-3)
A 		17.5
(-1.9)
A 		4.4
(-2.9)
A 		82
avr 29.4
(-0.5) 		19
(-2) 		53
(3) 		19.3
(-2) 		12.4
(-3) 		17.8
(-2.2) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.4
(3)
A 		12.4
(-2)
A 		11.5
(-2.5)
A 		10.4
(-3)
A 		12
B 2.6
(-3)
A 		17.8
(3)
A 		11.6
(0.6)
A 		6.6
(-1.4)
A 		15
C 12
(-0.4)
A 		6.3
(-3)
A 		9.9
(-1.3)
A 		19.3
(3)
A 		13
avr 12.3
(3) 		12.2
(2.5) 		11
(-3) 		12.1
(2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.6
(0.9)
A 		1.7
(-3)
A 		13.9
(3)
A 		4.4
(-1.7)
A 		1.7
(-3)
A 		11.2
(1.7)
A 		12
B 9.6
(2.7)
A 		5.2
(-0.2)
A 		2.5
(-2.1)
A 		10
(3)
A 		5.8
(0.2)
A 		1.1
(-3)
A 		9
C 3.3
(-2.2)
A 		11.2
(0)
A 		21.6
(3)
A 		0.6
(-3)
A 		5.7
(-1.5)
A 		1.5
(-2.7)
A 		21
avr 7.5
(-0.8) 		6
(-1.8) 		12.7
(3) 		5
(-2.6) 		4.4
(-3) 		4.6
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14577
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.15 NCBI
Target Description Y102A5C.15 /REP_DB=WormBase Gene ID /WP=CE20387 /TR=Q9XX77 /GB=CAA20958.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074886 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-206) (srh-206) mRNA, complete cds. 11/11 None
SNAP00000003157 ENSEMBL cdna:SNAP chromosome:CEL140:V:16955983:16957444:-1 11/11 None
Y102A5C.15 ENSEMBL cdna:known chromosome:CEL140:V:16956332:16957444:-1 gene:Y102A5C.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16956331-16957444(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-206
Ensembl Y102A5C.15
Entrez Gene 190839 Entrez gene
SwissProt Q9XX77 EMBL-EBI
WormBase CE20387 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20958 Hypothetical protein Y102A5C.15 [Caenorhabditis elegans] ref|NP_507287.1| Serpentine Receptor, class H family member (srh-206) [Caenorhabditis elegans] 1.0E-172
blast CAA20958 Hypothetical protein Y102A5C.15 [Caenorhabditis elegans] ref|NP_507287.1| Serpentine Receptor, class H family member (srh-206) [Caenorhabditis elegans] 1.0E-165
blast CAB16545 Hypothetical protein ZK262.1 [Caenorhabditis elegans] ref|NP_507601.2| Serpentine Receptor, class H family member (srh-207) [Caenorhabditis elegans] 1.0E-113
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 1.0E-110
blast CAB16545 Hypothetical protein ZK262.1 [Caenorhabditis elegans] ref|NP_507601.2| Serpentine Receptor, class H family member (srh-207) [Caenorhabditis elegans] 1.0E-110
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507287.1 7 20-42,55-77,97-119,140-162,203-225,246-268,283-305
Y102A5C.15 7 20-42,55-77,97-119,140-162,203-225,246-268,283-305
SNAP00000003157 7 20-42,55-77,97-119,140-162,203-225,246-268,283-305
Sequence
Target Sequence 
>C. ELEGANS:186547_AT
aaaagctagtgagcccattcttcctaccgtatcaatacatagtctacccatcgcacctag
cgtgctgtgtatttttaattccggatcaagaaagcgcattaaaggagctttttaagactc
ttccctgcctaccccgtgaaatatacgaagcacctatctatgtgataattgaggacatgc
gttatccaatgctcatgatagtgttaaacgtggcagcagtaacaattcaaattttattct
ttgttttgtgtcttgtttcgagtagcttaactcagctgaaagagaaaaaaatgtctctga
aaaccttccaaatgcaaaagcaattcctgattgccgtgatagtgcagagcacggctccaa
ttatttgtttcatggtacctcttttctattttatatttgcattttttctggcgtattata
atcaaggaatgatcaattgtttactggttattgcgtcgattcatggactaatctcaacca
tagccatgatggttcttcacaggccttaccgagaagtcttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCTAGTGAGCCCATTCTTCCT 35 131 419 Antisense
CCATTCTTCCTACCGTATCAATACA 221 271 433 Antisense
TCAATACATAGTCTACCCATCGCAC 542 633 450 Antisense
CCATCGCACCTAGCGTGCTGTGTAT 412 271 466 Antisense
AGGAGCTTTTTAAGACTCTTCCCTG 44 55 521 Antisense
GAGGACATGCGTTATCCAATGCTCA 181 405 589 Antisense
ATTCTTTGTTTTGTGTCTTGTTTCG 278 11 654 Antisense
GAGCACGGCTCCAATTATTTGTTTC 76 391 765 Antisense
TCATGGTACCTCTTTTCTATTTTAT 472 621 788 Antisense
TAGCCATGATGGTTCTTCACAGGCC 150 649 899 Antisense
ACAGGCCTTACCGAGAAGTCTTGTC 556 103 917 Antisense
Sequence Source Affymetrix Proprietary Database